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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2011 Jun 11;67(Pt 7):m875. doi: 10.1107/S1600536811021039

6-Phenyl-6,7-dihydro­dibenzo[c,f][1,5]aza­bis­mocin-12(5H)-yl perchlorate

Xiao-Wen Zhang a,*, Ting Fan b
PMCID: PMC3151844  PMID: 21836870

Abstract

In the title compound, [Bi(C20H17N)(ClO4)] or C20H17BiClNO4, the BiIII ion assumes a distorted ψ trigonal–bipyramidal geometry, with two C atoms and the electron lone pair of the Bi atom at the equatorial positions and an amine N atom and a perchlorate O atom at the apical positions. Weak inter­molecular C—H⋯O hydrogen bonding is present in the crystal structure.

Related literature

For the synthesis of 12-chloro-6-phenyl-5,6,7,12-tetra­hydro­dibenzo[c,f][1,5]aza­bis­mocine, see: Zhang et al. (2009). For general background, see: Shimada et al. (2004); Yin et al. (2008); Zhang et al. (2010); Tan & Zhang (2011). For related structures, see: Ohkata et al. (1989); Minoura et al. (1999). graphic file with name e-67-0m875-scheme1.jpg

Experimental

Crystal data

  • [Bi(C20H17N)(ClO4)]

  • M r = 579.78

  • Monoclinic, Inline graphic

  • a = 12.0635 (10) Å

  • b = 14.0755 (12) Å

  • c = 11.5121 (10) Å

  • β = 107.590 (2)°

  • V = 1863.4 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 9.63 mm−1

  • T = 293 K

  • 0.32 × 0.21 × 0.20 mm

Data collection

  • Bruker SMART 1000 CCD area-detector diffractometer

  • Absorption correction: multi-scan(SADABS; Bruker, 2001) T min = 0.100, T max = 0.145

  • 9267 measured reflections

  • 3279 independent reflections

  • 2585 reflections with I > 2σ(I)

  • R int = 0.166

Refinement

  • R[F 2 > 2σ(F 2)] = 0.065

  • wR(F 2) = 0.163

  • S = 1.02

  • 3279 reflections

  • 244 parameters

  • H-atom parameters constrained

  • Δρmax = 4.89 e Å−3

  • Δρmin = −4.14 e Å−3

Data collection: SMART (Bruker, 2007); cell refinement: SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021039/xu5208sup1.cif

e-67-0m875-sup1.cif (17.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021039/xu5208Isup2.hkl

e-67-0m875-Isup2.hkl (157.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811021039/xu5208Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Selected bond lengths (Å).

Bi—N1 2.387 (10)
Bi—O1 2.546 (10)
Bi—C1 2.245 (13)
Bi—C8 2.204 (12)

Table 2. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C4—H4⋯O3i 0.93 2.46 3.137 (17) 130
C14—H14B⋯O2ii 0.97 2.55 3.398 (16) 146

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Acknowledgments

The authors acknowledge the National Science Foundation of China (grant No. 51074093) for supporting this work.

supplementary crystallographic information

Comment

Bismuth is a nontoxic and noncarcinogenic element and many of its compounds are low in toxicity and can be safely used in areas such as medicine, catalysis, and synthesis (Shimada et al., 2004; Yin et al., 2008; Zhang, Qiu, Tan et al., 2010). The 5,6,7,12-tetrahydrodibenz[c,f][1,5]azabismocine framework is highly stable as a organobismuth Fragment because the weakly coordination exists between bismuth and nitrogen atoms on 1,5-azabismocine (Ohkata et al.,1989; Minoura et al.,1999), and therefore, is suitable for the study of organobismuth compounds bearing various groups on the bismuth and nitrogen atom for potential uses.

In the present paper, we report the crystal structure of the title compound (Fig. 1). The central bismuth–containing part of the complex exhibits a distorted pseudo trigonal–bipyramidal structure. The C (8), C (1) atoms and a lone electron pair of the Bi atom exist at the equatorial positions while the N (1) and O (1) atoms are located at the apical positions. The Bi–C (8) and Bi–C (1) distance is 2.250 (13) Å and 2.204 (12) Å, respectively. The C (8)–Bi–C (1) angle is 92.5 (5) ° while the N (1)–Bi–O (1) angle is 154.0 (3)°(rather than 180°). The Bi–N (1) distance (2.388 (10) Å) is shorter than 2.607 (5) Å of the precursor, C6H5N(CH2C6H4)2BiCl.The Bi–O (1) distance(2.546 (10) Å) is shorter than Bi–Cl(1) distance 2.597 (19) Å also(Zhang, Xia, Yan et al., 2009).

Experimental

The following procedures are recommended for synthesis of the title compound (I): 12-chloro-6-phenyl-5,6,7,12-tetrahydrodibenzo[c,f][1,5]azabismocine (0.516 g, 1.0 mmol) was dissolved in 15 ml THF, then a solution of AgClO4 (0.207 g, 1.0 mmol) in 15.0 ml THF was added. After the mixture was stirred in the dark at room temperature for 2 h, it was filtered. The filtrate mixed with 1.0 ml hexane was refrigerated for 24 h, giving colorless crystals (0.539 g, 93.0%).

Refinement

All H atoms were positioned geometrically and refined using a riding model, with C-H = 0.93 Å for aryl, 0.98 Å methine and 0.97 Å for methylene H atoms, respectively. Uiso(H)= 1.2Ueq(C) for all H atoms.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with atomic numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. All hydrogen atoms are omitted for clarity.

Crystal data

[Bi(C20H17N)(ClO4)] F(000) = 1104
Mr = 579.78 Dx = 2.067 Mg m3
Monoclinic, P21/c Mo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybc Cell parameters from 2936 reflections
a = 12.0635 (10) Å θ = 2.7–24.2°
b = 14.0755 (12) Å µ = 9.63 mm1
c = 11.5121 (10) Å T = 293 K
β = 107.590 (2)° Prismatic, colorless
V = 1863.4 (3) Å3 0.32 × 0.21 × 0.20 mm
Z = 4

Data collection

Bruker SMART 1000 CCD area-detector diffractometer 3279 independent reflections
Radiation source: fine-focus sealed tube 2585 reflections with I > 2σ(I)
graphite Rint = 0.166
φ and ω scans θmax = 25.0°, θmin = 1.8°
Absorption correction: empirical (using intensity measurements) (SADABS; Bruker, 2001) h = −10→14
Tmin = 0.100, Tmax = 0.145 k = −13→16
9267 measured reflections l = −13→13

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.065 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.163 H-atom parameters constrained
S = 1.02 w = 1/[σ2(Fo2) + (0.0816P)2] where P = (Fo2 + 2Fc2)/3
3279 reflections (Δ/σ)max = 0.001
244 parameters Δρmax = 4.89 e Å3
0 restraints Δρmin = −4.14 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
Bi 0.74646 (4) 0.77309 (3) 0.84604 (4) 0.0321 (2)
Cl1 0.7240 (3) 1.0213 (2) 0.8825 (3) 0.0378 (7)
N1 0.7225 (7) 0.6171 (8) 0.7606 (7) 0.033 (2)
O1 0.7940 (9) 0.9494 (7) 0.8480 (10) 0.063 (3)
O2 0.6291 (9) 0.9730 (7) 0.9075 (10) 0.069 (3)
O3 0.6836 (10) 1.0854 (8) 0.7850 (10) 0.071 (3)
O4 0.7937 (12) 1.0687 (8) 0.9874 (10) 0.086 (4)
C1 0.6226 (11) 0.7895 (8) 0.6574 (11) 0.037 (3)
C2 0.6002 (10) 0.8714 (8) 0.5878 (10) 0.034 (3)
H2 0.6373 0.9281 0.6181 0.041*
C3 0.5204 (11) 0.8671 (9) 0.4706 (11) 0.041 (3)
H3 0.5026 0.9222 0.4241 0.049*
C4 0.4688 (12) 0.7846 (8) 0.4240 (12) 0.042 (3)
H4 0.4163 0.7830 0.3459 0.051*
C5 0.4949 (11) 0.7005 (9) 0.4943 (11) 0.037 (3)
H5 0.4603 0.6435 0.4617 0.045*
C6 0.5695 (10) 0.7026 (9) 0.6080 (10) 0.033 (3)
C7 0.5996 (10) 0.6133 (8) 0.6827 (9) 0.031 (3)
H7A 0.5489 0.6068 0.7335 0.037*
H7B 0.5881 0.5586 0.6292 0.037*
C8 0.8978 (11) 0.7594 (8) 0.7776 (11) 0.030 (3)
C9 0.9896 (11) 0.8252 (10) 0.7942 (12) 0.047 (3)
H9 0.9914 0.8787 0.8421 0.056*
C10 1.0741 (11) 0.8122 (10) 0.7424 (14) 0.051 (4)
H10 1.1337 0.8565 0.7542 0.062*
C11 1.0723 (14) 0.7321 (10) 0.6709 (16) 0.055 (4)
H11 1.1291 0.7246 0.6321 0.066*
C12 0.9893 (10) 0.6651 (9) 0.6570 (11) 0.038 (3)
H12 0.9919 0.6101 0.6132 0.045*
C13 0.8986 (9) 0.6785 (8) 0.7091 (9) 0.030 (2)
C14 0.8015 (10) 0.6065 (8) 0.6812 (10) 0.033 (3)
H14A 0.8350 0.5433 0.6923 0.040*
H14B 0.7555 0.6128 0.5965 0.040*
C15 0.7472 (9) 0.5399 (9) 0.8534 (10) 0.033 (3)
C16 0.6852 (11) 0.4552 (9) 0.8367 (12) 0.041 (3)
H16 0.6240 0.4455 0.7659 0.049*
C17 0.7139 (13) 0.3865 (10) 0.9238 (14) 0.053 (4)
H17 0.6723 0.3298 0.9117 0.064*
C18 0.8062 (14) 0.4002 (11) 1.0325 (14) 0.058 (4)
H18 0.8251 0.3532 1.0919 0.069*
C19 0.8671 (14) 0.4831 (12) 1.0489 (13) 0.064 (4)
H19 0.9281 0.4920 1.1202 0.077*
C20 0.8408 (11) 0.5534 (11) 0.9634 (11) 0.050 (3)
H20 0.8833 0.6097 0.9763 0.060*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
Bi 0.0313 (3) 0.0438 (3) 0.0201 (3) 0.00040 (18) 0.0062 (2) −0.00470 (18)
Cl1 0.0407 (17) 0.0414 (16) 0.0248 (14) 0.0024 (13) 0.0001 (12) 0.0037 (13)
N1 0.018 (5) 0.070 (7) 0.007 (4) 0.002 (4) −0.001 (4) 0.001 (4)
O1 0.047 (6) 0.064 (7) 0.079 (8) 0.005 (5) 0.020 (5) −0.009 (6)
O2 0.054 (6) 0.076 (7) 0.086 (8) 0.001 (5) 0.036 (6) 0.026 (6)
O3 0.082 (8) 0.065 (7) 0.059 (7) 0.000 (6) 0.008 (6) 0.034 (6)
O4 0.122 (11) 0.076 (8) 0.035 (6) −0.017 (7) −0.015 (6) −0.011 (6)
C1 0.038 (7) 0.045 (7) 0.033 (7) 0.005 (5) 0.016 (6) −0.005 (6)
C2 0.041 (7) 0.038 (6) 0.025 (6) 0.005 (5) 0.012 (5) 0.003 (5)
C3 0.043 (7) 0.053 (8) 0.032 (7) 0.013 (6) 0.019 (6) 0.013 (6)
C4 0.044 (8) 0.049 (8) 0.030 (7) 0.006 (6) 0.006 (6) −0.004 (6)
C5 0.034 (7) 0.050 (8) 0.022 (6) 0.002 (5) −0.002 (5) −0.008 (5)
C6 0.021 (6) 0.054 (7) 0.025 (6) 0.000 (5) 0.006 (5) 0.007 (5)
C7 0.033 (6) 0.036 (6) 0.020 (5) −0.006 (5) 0.003 (5) 0.004 (5)
C8 0.030 (7) 0.038 (6) 0.027 (6) 0.001 (5) 0.015 (5) 0.003 (5)
C9 0.045 (8) 0.045 (8) 0.048 (8) −0.013 (6) 0.010 (6) −0.015 (7)
C10 0.031 (7) 0.058 (8) 0.066 (9) −0.013 (6) 0.015 (7) 0.005 (8)
C11 0.051 (10) 0.066 (10) 0.058 (10) 0.007 (7) 0.030 (8) 0.012 (8)
C12 0.035 (7) 0.046 (7) 0.034 (6) 0.004 (5) 0.012 (5) −0.003 (6)
C13 0.031 (6) 0.039 (6) 0.020 (5) 0.002 (5) 0.006 (5) 0.003 (5)
C14 0.034 (6) 0.042 (7) 0.026 (6) −0.001 (5) 0.014 (5) −0.003 (5)
C15 0.036 (7) 0.036 (7) 0.030 (6) 0.004 (5) 0.015 (5) 0.006 (5)
C16 0.038 (7) 0.045 (8) 0.039 (7) 0.005 (6) 0.010 (6) 0.010 (6)
C17 0.059 (9) 0.045 (8) 0.063 (9) 0.005 (7) 0.029 (8) 0.020 (7)
C18 0.066 (10) 0.063 (10) 0.050 (9) 0.020 (8) 0.026 (8) 0.024 (8)
C19 0.061 (10) 0.083 (12) 0.041 (8) 0.011 (9) 0.005 (7) 0.018 (8)
C20 0.042 (8) 0.069 (10) 0.027 (7) 0.000 (7) −0.007 (6) 0.004 (7)

Geometric parameters (Å, °)

Bi—N1 2.387 (10) C8—C13 1.387 (17)
Bi—O1 2.546 (10) C8—C9 1.411 (17)
Bi—C1 2.245 (13) C9—C10 1.340 (18)
Bi—C8 2.204 (12) C9—H9 0.9300
Cl1—O3 1.407 (10) C10—C11 1.39 (2)
Cl1—O4 1.413 (10) C10—H10 0.9300
Cl1—O2 1.434 (10) C11—C12 1.349 (19)
Cl1—O1 1.448 (10) C11—H11 0.9300
N1—C7 1.484 (13) C12—C13 1.410 (16)
N1—C15 1.490 (15) C12—H12 0.9300
N1—C14 1.514 (12) C13—C14 1.508 (15)
C1—C2 1.383 (16) C14—H14A 0.9700
C1—C6 1.418 (17) C14—H14B 0.9700
C2—C3 1.402 (17) C15—C16 1.389 (18)
C2—H2 0.9300 C15—C20 1.432 (16)
C3—C4 1.351 (18) C16—C17 1.360 (18)
C3—H3 0.9300 C16—H16 0.9300
C4—C5 1.414 (18) C17—C18 1.41 (2)
C4—H4 0.9300 C17—H17 0.9300
C5—C6 1.347 (16) C18—C19 1.36 (2)
C5—H5 0.9300 C18—H18 0.9300
C6—C7 1.504 (16) C19—C20 1.365 (19)
C7—H7A 0.9700 C19—H19 0.9300
C7—H7B 0.9700 C20—H20 0.9300
C8—Bi—C1 92.5 (5) C13—C8—C9 118.4 (11)
C8—Bi—N1 77.4 (4) C13—C8—Bi 115.1 (8)
C1—Bi—N1 74.6 (4) C9—C8—Bi 126.5 (9)
C8—Bi—O1 83.1 (4) C10—C9—C8 121.5 (13)
C1—Bi—O1 89.4 (4) C10—C9—H9 119.3
N1—Bi—O1 154.0 (3) C8—C9—H9 119.3
O3—Cl1—O4 110.7 (7) C9—C10—C11 119.7 (13)
O3—Cl1—O2 111.0 (7) C9—C10—H10 120.2
O4—Cl1—O2 110.9 (7) C11—C10—H10 120.2
O3—Cl1—O1 108.6 (7) C12—C11—C10 120.9 (13)
O4—Cl1—O1 108.6 (8) C12—C11—H11 119.5
O2—Cl1—O1 106.9 (6) C10—C11—H11 119.5
C7—N1—C15 110.7 (9) C11—C12—C13 120.0 (12)
C7—N1—C14 109.2 (8) C11—C12—H12 120.0
C15—N1—C14 109.6 (8) C13—C12—H12 120.0
C7—N1—Bi 104.8 (7) C8—C13—C12 119.4 (11)
C15—N1—Bi 113.7 (6) C8—C13—C14 122.3 (10)
C14—N1—Bi 108.6 (7) C12—C13—C14 118.2 (10)
Cl1—O1—Bi 122.3 (6) C13—C14—N1 113.3 (9)
C2—C1—C6 120.1 (12) C13—C14—H14A 108.9
C2—C1—Bi 127.1 (9) N1—C14—H14A 108.9
C6—C1—Bi 112.7 (8) C13—C14—H14B 108.9
C1—C2—C3 118.6 (12) N1—C14—H14B 108.9
C1—C2—H2 120.7 H14A—C14—H14B 107.7
C3—C2—H2 120.7 C16—C15—C20 119.0 (11)
C4—C3—C2 121.3 (12) C16—C15—N1 123.0 (10)
C4—C3—H3 119.4 C20—C15—N1 118.0 (11)
C2—C3—H3 119.4 C17—C16—C15 120.1 (13)
C3—C4—C5 119.8 (13) C17—C16—H16 119.9
C3—C4—H4 120.1 C15—C16—H16 119.9
C5—C4—H4 120.1 C16—C17—C18 120.8 (14)
C6—C5—C4 120.4 (12) C16—C17—H17 119.6
C6—C5—H5 119.8 C18—C17—H17 119.6
C4—C5—H5 119.8 C19—C18—C17 119.2 (13)
C5—C6—C1 119.8 (12) C19—C18—H18 120.4
C5—C6—C7 120.9 (11) C17—C18—H18 120.4
C1—C6—C7 119.3 (11) C18—C19—C20 121.6 (15)
N1—C7—C6 109.9 (9) C18—C19—H19 119.2
N1—C7—H7A 109.7 C20—C19—H19 119.2
C6—C7—H7A 109.7 C19—C20—C15 119.4 (14)
N1—C7—H7B 109.7 C19—C20—H20 120.3
C6—C7—H7B 109.7 C15—C20—H20 120.3
H7A—C7—H7B 108.2

Hydrogen-bond geometry (Å, °)

D—H···A D—H H···A D···A D—H···A
C4—H4···O3i 0.93 2.46 3.137 (17) 130
C14—H14B···O2ii 0.97 2.55 3.398 (16) 146

Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) x, −y+3/2, z−1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: XU5208).

References

  1. Bruker (2001). SADABS Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Bruker (2007). SMART and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  3. Minoura, M., Kanamori, Y., Miyake, A. & Akiba, K. (1999). Chem. Lett. pp. 861–862.
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811021039/xu5208sup1.cif

e-67-0m875-sup1.cif (17.9KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811021039/xu5208Isup2.hkl

e-67-0m875-Isup2.hkl (157.6KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536811021039/xu5208Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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