Table 3.
Single nucleotide variations identified in the HCC1954 and HCC1954BL genomes
| HCC1954 | HCC1954BL | |
|---|---|---|
| N (%) in dbSNP | N (%) in dbSNP | |
| Substitutions | 82 355 (92.68) | 83 474 (93.60) |
| Coding | 11 717 (90.92) | 12 373 (93.84) |
| Intronic | 60 314 (92.53) | 61 428 (93.77) |
| UTR | 3419 (92.57) | 3570 (94.04) |
| ncRNA | 256 (96.87) | 260 (96.92) |
| Intergenic | 6649 (91.84) | 5843 (90.86) |
| Indels | 689 (52.10) | 587 (52.81) |
| Coding | 38 (50.00) | 31 (51.61) |
| Intronic | 595 (52.43) | 506 (54.15) |
| UTR | 30 (46.66) | 26 (42.30) |
| ncRNA | 1 (100.00) | 1 (0.00) |
| Intergenic | 25 (52.00) | 23 (39.13) |
UTR = untranslated region, ncRNA = non-coding RNA