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. 2011 May 18;39(14):e93. doi: 10.1093/nar/gkr240

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© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — Pseudocode of TT2NE. The core routine is written in black and performs an exhaustive enumeration of all independent sets of . In the end, the MFE structure can be read in the global variable ΔF_cm. The two red lines are improvements discussed in the text.

Inline graphic — Pseudocode of TT2NE. The core routine is written in black and performs an exhaustive enumeration of all independent sets of . In the end, the MFE structure can be read in the global variable ΔF_cm. The two red lines are improvements discussed in the text.