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. 2011 Jun 10;87(6):287–327. doi: 10.2183/pjab.87.287

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© 2011 The Japan Academy

This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 13. — Phylogenetic tree and sequence alignment of TRA-3 calpains. A. Phylogenetic tree of TRA-3 calpains and human CAPN1/μCL. See Fig. 3A for methods. B. Sequence alignment of TRA-3 and human CAPN1/μCL (the start and end aa residue numbers are indicated). Sequences: 0: H. sapiens CAPN1/μCL NP005177; 1: H. sapiens CAPN5 NP004046; 2: M. domestica CAPN5 XP001377962; 3: G. gallus CAPN5 XP417278; 4: X. tropicalis CAPN5 NP001006736; 5: D. rerio CAPN5 NP001073476; 6: D. rerio CAPN5-2 XP001345114; 7: H. sapiens CAPN6 NP055104; 8: M. domestica CAPN6 XP001366895; 9: G. gallus CAPN6 XP420313; 10: X. tropicalis CAPN6 XP002938834; 11: X. tropicalis TRA-3 XP002941290; 12: D. rerio TRA-3 XP001339053; 13: Strongylocentrotus purpuratus CAPN5 XP001178522; 14: S. mansoni XP002578116; 15: C. elegans TRA-3/CLP-5 NP502751. For other explanation, see Fig. 12B.

Figure 13. — Phylogenetic tree and sequence alignment of TRA-3 calpains. A. Phylogenetic tree of TRA-3 calpains and human CAPN1/μCL. See Fig. 3A for methods. B. Sequence alignment of TRA-3 and human CAPN1/μCL (the start and end aa residue numbers are indicated). Sequences: 0: H. sapiens CAPN1/μCL NP005177; 1: H. sapiens CAPN5 NP004046; 2: M. domestica CAPN5 XP001377962; 3: G. gallus CAPN5 XP417278; 4: X. tropicalis CAPN5 NP001006736; 5: D. rerio CAPN5 NP001073476; 6: D. rerio CAPN5-2 XP001345114; 7: H. sapiens CAPN6 NP055104; 8: M. domestica CAPN6 XP001366895; 9: G. gallus CAPN6 XP420313; 10: X. tropicalis CAPN6 XP002938834; 11: X. tropicalis TRA-3 XP002941290; 12: D. rerio TRA-3 XP001339053; 13: Strongylocentrotus purpuratus CAPN5 XP001178522; 14: S. mansoni XP002578116; 15: C. elegans TRA-3/CLP-5 NP502751. For other explanation, see Fig. 12B.