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Main cellular pathways and processes inferred to be modulated or activated after colonization of mouse colon by A. muciniphila. Distinguishing features are the induction of pathways involved in intracellular signaling, induction of secretion of (antimicrobial) factors, and of pathways that promote expression of immune cell receptors that mediate adhesion and T or B cell receptor signaling. For further explanation, see legend of Figure 5.
