Table 4.
The Most Significant SNPs Mapped to the Leading-Edge Genes of the ROA Pathway
SNP | Gene | p Value | Role | Allele | MAFa |
---|---|---|---|---|---|
rs7037147 | IFNA14 | 1.10 × 10−3 | Intron | A/G | 0.16 |
rs6883910 | ATG12 | 2.11 × 10−3 | Upstream | A/C | 0.39 |
rs7852323 | IFNA21 | 2.90 × 10−3 | Upstream | A/G | 0.17 |
rs1360286 | IFNA5 | 3.16 × 10−3 | Downstream | A/C | 0.21 |
rs10964938 | IFNA17 | 3.49 × 10−3 | Upstream | A/C | 0.18 |
rs10757219 | IFNA8 | 4.92 × 10−3 | Promoter/regulatory region | A/G | 0.28 |
rs2015345 | IFNA16 | 5.46 × 10−3 | Downstream | A/C | 0.17 |
rs1477479 | IFNA4 | 6.02 × 10−3 | Downstream | A/T | 0.17 |
rs7856345 | IFNA7 | 6.55 × 10−3 | Downstream | A/T | 0.18 |
rs17536147 | ATG7 | 8.32 × 10−3 | Intron | C/G | 0.08 |
rs637949 | IFNA13 | 1.21 × 10−2 | Upstream | C/G | 0.17 |
rs9955346 | PIK3C3 | 1.57 × 10−2 | Upstream | A/G | 0.17 |
rs694433 | ATG5 | 1.62 × 10−2 | Upstream | A/G | 0.21 |
MAF (minor allele frequency) in our sample.