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. 2011 Aug 10;6(8):e21915. doi: 10.1371/journal.pone.0021915

Figure 1. Phylogeny of the Silene species studied.

Figure 1

Only bootstrap values >50% are shown. The breeding systems of the species are indicated in the figure. The outgroup for rooting the tree for the genus Silene was usually P. hispanica (see Tables S2 and S3 for details). For the sex-linked genes, only X sequences were included. A) Maximum likelihood tree obtained with PhyML using the concatenated alignment with 12 genes (LIP21 and the outgroup sequences for 2A10, clpP3, ELF were excluded by Concaterpillar). B) Dataset is as in A, but tree obtained by combining all 12 gene trees using the SDM method. C) Consensus tree built from the trees in A and B. Labels 1, 2 and 3 in the trees indicate the nodes used in the BayesTraits analysis (see main text).