Table 2. Structural statistics for both OX-DNA and undamaged-DNA structures in the TGGT sequence context.
Structure Related Information | OX-DNA | Undamaged DNA |
A. Experimental Distance Constraints | ||
Intra-residue | 315 | 432 |
Inter-residue | 112 | 233 |
Cross-strand | 54 | 118 |
Total | 481 | 665 |
B. Empirical Constraints | ||
Hydrogen bond | 72 | 72 |
Backbone Dihedral Angles | 168 | 168 |
C. Structural Statistics | ||
Distance Violation per structure (>0.5 Å) | 0 | 0 |
Dihedral Angle Violations per structure (>5°) | 0 | 0 |
RMSD from ideal covalent geometry | ||
Bond Length (Å) | 0.00 ± 0.01 | 0.01 ± 0.01 |
Bond Angle (°) | 0.69 ± 0.01 | 0.46 ± 0.01 |
Dihedral Angle (°) | 1.859 ± 0.01 | 0.00 ± 0.00 |
D. Structure Quality | ||
RMSD to the mean structure within the family (Å) | ||
All atoms | 1.00 ± 0.30 | 1.16 ± 0.38 |
Non H atoms | 0.83± 0.26 | 1.21 ± 0.30 |