Table 1.
Novel full-length Mafa alleles
| Mafa allele name | Accession # | Animals | Animal origin(s) | Accession #(s)–identical Mafa sequence(s) | Origin(s)–identical Mafa |
|---|---|---|---|---|---|
| DPA1*02:06 | HM580025 | DR011 | Vietnam | None | |
| DPA1*02:07 | HM580026 | DR012 | Vietnam | none | |
| DPA1*02:08:01 | HM580029 | DR017 | Vietnam | none | |
| DPA1*02:08:02 | HM579970 | CE06 | Indonesia | none | |
| DPA1*02:09 | HM580030 | DR014, DR019 | Vietnam | none | |
| DPA1*02:10 | HM580031 | DR018 | Vietnam | none | |
| DPA1*02:11 | HM579965 | CE28 | Indonesia | none | |
| DPA1*02:12 | HM579966 | IN10 | Indonesia | none | |
| DPA1*02:13 | HM579967 | IN10 | Indonesia | none | |
| DPA1*02:14 | HM579968 | IN04, CE06 | Indonesia | none | |
| DPA1*02:15 | HM579971 | CE03 | Indonesia | none | |
| DPA1*02:16 | HM579972 | CE16, WF01 | Indonesia | none | |
| DPA1*02:17 | HM579974 | WF05 | Indonesia | none | |
| DPA1*04:02 | HM579969 | CE23, IN01, WF01 | Indonesia | none | |
| DPA1*06:01 | HM580027 | DR012 | Vietnam | none | |
| DPA1*07:03 | HM580028 | DR015 | Vietnam | none | |
| DPA1*07:04 | HM579964 | CE12, CE28 | Indonesia | none | |
| DPA1*08:01 | HM580032 | DR015 | Vietnam | none | |
| DPA1*09:01 | HM580024 | DR009 | Vietnam | none | |
|
| |||||
| DPB1*01:01:01 | HM580034 | DR009 | Vietnam | AB235856 (1) | In, Vi |
| DPB1*01:01:02a | HM580042 | DR010 | Vietnam | AB235856 (1) | In, Vi |
| DPB1*02:01:01 | HM580036 | DR012, DR016 | Vietnam | AB235857 (1), AM086061 (2) | Vi |
| DPB1*06 | HM579979 | CE06 | Indonesia | AB235861 (1) | In |
| DPB1*09 | HM580039 | DR016 | Vietnam | AB235864 (1), D13335 (3) | Vi |
| DPB1*10 | HM580037 | DR013, DR014, DR020 | Vietnam | AB235865 (1), D13336 (3) | Vi |
| DPB1*13 | HM580041 | DR019 | Vietnam | AB235868 (1), HM371245 (4) | In, Ph, Vi |
| DPB1*14 | HM579977 | CE28, IN10, IN11 | Indonesia | AB235869 (1), AM086066 (2) | In |
| DPB1*17 | HM580038 | DR017 | Vietnam | AB235872 (1), HM371252 (4) | Vi |
| DPB1*20 | HM580035 | DR011, CE06 | Both | AB235875 (1), AM086062 (2), HM153016 (4) | In, Ph, Vi |
| DPB1*22 | HM579982 | CE03 | Indonesia | AB235877 (1), AM086165 (2) | In, Ph |
| DPB1*32 | HM579986 | IN11 | Indonesia | AB235887 (1), HM371251 (4) | In, Vi |
| DPB1*51 | HM579978 | IN10 | Indonesia | HM153013 (4) | Vi |
| DPB1*56 | HM580040 | DR010 | Vietnam | none | |
| DPB1*57 | HM579981 | DR020, CE23, IN01, WF01 | Both | none | |
| DPB1*58 | HM579983 | CE16, WF01 | Indonesia | none | |
|
| |||||
| DQA1*01:03:02 | HM580044 | DR009, DR010, DR017, CE26 | Both | AM086164 (2) | |
| DQA1*01:09 | HM579992 | CE03 | Indonesia | none | |
| DQA1*01:10 | HM579993 | CE23 | Indonesia | none | |
| DQA1*01:11a | HM579995 | IN04, WF01 | Indonesia | AM086164 (2) | |
| DQA1*01:12 | HM580050 | DR016 | Vietnam | none | |
| DQA1*05:01 | HM580046 | DR011, DR018, CE06 | Both | AM086053 (2) | |
| DQA1*05:03:02 | HM579988 | DR012, DR020, IN10, CE23 | Both | none | |
| DQA1*05:05 | HM580047 | DR012 | Vietnam | none | |
| DQA1*05:06 | HM580051 | DR020 | Vietnam | none | |
| DQA1*24:04 | HM579990 | IN01 | Indonesia | none | |
| DQA1*24:05 | HM579991 | DR009, DR018, CE12 | Both | none | |
| DQA1*26:01 | HM580049 | DR013 | Vietnam | M76208 (5) | |
| DQA1*26:04 | HM580048 | DR014, DR019 | Vietnam | none | |
| DQA1*26:06a | HM580045 | DR011, CE16 | Both | M76208 (5) | |
|
| |||||
| DQB1*06:07:01 | HM579998 | IN04, WF01 | Indonesia | AJ308055 (6) | |
| DQB1*06:13 | HM580005 | WF05 | Indonesia | AJ308061 (6), HM153002 (4) | Vi |
| DQB1*06:14 | HM579999 | DR016, IN04, WF05 | Both | AJ308062 (6), HM371235 (4) | Vi |
| DQB1*06:16 | HM580052 | DR009 | Vietnam | GQ266371 (7), HM371234 (4) | Vi |
| DQB1*06:18 | HM580003 | CE16, CE23, WF01 | Indonesia | GQ266374 (7) | |
| DQB1*06:19 | HM580060 | DR010 | Vietnam | GQ266375 (7), HM153001 (4) | Vi |
| DQB1*06:26 | HM580004 | CE23 | Indonesia | GQ266382 (7), HM371232 (4) | Vi |
| DQB1*06:31 | HM580059 | CE23 | Vietnam | none | |
| DQB1*06:32 | HM580062 | DR019 | Indonesia | none | |
| DQB1*15:03 | HM580057 | DR010, DR020 | Vietnam | AJ308063 (6), HM371225 (4) | Vi |
| DQB1*15:04 | HM580061 | DR020 | Vietnam | none | |
| DQB1*17:02 | HM580055 | DR012 | Vietnam | X57753 (8), GQ266364 (7), HM153009 (4) | Vi |
| DQB1*17:03 | HM580001 | DR011, DR017, CE06 | Both | AJ308065 (6), HM371227 (4) | Vi |
| DQB1*17:07:01 | HM580054 | DR011, CE16 | Both | GU130498 (7), HM153012 (4) | Vi |
| DQB1*18:05 | HM580000 | CE12, IN01 | Indonesia | AJ308072 (6) | |
| DQB1*18:09 | HM580053 | DR009, DR015 | Vietnam | GU130499 (7), HM371239 (4) | Vi |
| DQB1*18:13 | HM580056 | DR013 | Vietnam | GU130503 (7) | |
| DQB1*18:20 | HM580058 | DR019 | Vietnam | none | |
| DQB1*18:21 | HM580002 | CE03 | Indonesia | none | |
|
| |||||
| DRA*01:01:07 | HM580064 | DR013 | Vietnam | AB306655 (7), AY591919 (9), EU877205 (10) | |
| DRA*01:01:08 | HM580067 | DR015 | Vietnam | EU921294 (10) | |
| DRA*01:03:05 | HM580066 | DR016 | Vietnam | EU877206 (10) | |
| DRA*01:04:01:01 | HM580065 | DR010, DR012, DR013, DR017, DR019, DR020 | Vietnam | AB306656 (7) | |
| DRA*02:01:04 | HM580011 | CE16 | Indonesia | none | |
|
| |||||
| DRB*W1:01 | HM580068 | DR009, DR011, DR012, DR013, DR017, IN11 | Both | AF492309 (11), AY340677 (12) | Ch, Ph |
| DRB*W1:02 | FJ919740 | DR017, DR018, CE06 | Both | AF492306 (11), AY340683 (12) | Ch, Ph |
| DRB*W2:06 | FJ919741 | DR011, DR017, DR018, CE06 | Both | EF175105 (7), FN433714 (7) | In, Vi |
| DRB*W3:03:01 | HM580016 | CE23 | Indonesia | AM086041 (2), EF175140 (7) | In |
| DRB*W3:05 | HM580073 | DR013, DR014 | Vietnam | AM086043 (2), EF175129 (7) | In |
| DRB*W3:06 | FJ919732 | IN04 | Indonesia | AM086044 (2), EF175139 (7) | In |
| DRB*W4:03 | HM580075 | DR019 | Vietnam | DQ363298 (7), DQ156968 (13) | Vi |
| DRB*W4:04 | HM580074 | DR012 | Vietnam | DQ363267 (7), DQ777754 (15), HQ148690 (7) | Ch, Vi |
| DRB*W7:02 | FJ919739 | CE12 | Indonesia | AM086046 (2), EF175122 (7), HM153072 (7) | Ch, In, Vi |
| DRB*W7:05 | HM580013 | CE03 | Indonesia | FN433704 (16) | |
| DRB*W7:07a | HM580014 | CE16 | Indonesia | AM086046 (2), EF175122 (7) | In, Vi |
| DRB*W25:03 | HM580076 | DR019 | Vietnam | DQ156970 (13), EF175126 (7) | In, Vi |
| DRB*W26:01:01 | HM580078 | DR015 | Vietnam | DQ363270 (7), FN433706 (7), HM153074 (7) | Ch, Vi |
| DRB*W26:02:01 | FJ919733 | IN04, WF01 | Indonesia | AM911048 (7), DQ363300 (7), EF175132 | In |
| DRB*W27:01 | FJ919726 | CE28 | Indonesia | AY340671 (12), DQ363277 (7), HM153055 (7) | Ch, Vi |
| DRB*W33:01:02 | FJ919736 | IN01 | Indonesia | none | |
| DRB*W36:02:02 | FJ919730 | DR19, IN01, IN10 | Both | AM910925 (14) | |
| DRB*W40:01 | HM580017 | CE23 | Indonesia | DQ156971 (13) | |
| DRB*W64:01 | HM580072 | DR012 | Vietnam | DQ363274 (7), FN433702 (7) | Vi |
| DRB*W66:01 | FJ919727 | CE28 | Indonesia | AM910926 (14) | |
| DRB*W73:01 | FJ919731 | IN10 | Indonesia | none | |
| DRB1*03:03 | HM580069 | DR009, DR014, DR017 | Vietnam | AY340673 (12), DQ363296 (7) | Ch, Vi |
| DRB1*03:06:02 | HM580071 | DR011 | Vietnam | none | |
| DRB1*03:29 | HM580070 | DR011 | Vietnam | none | |
| DRB1*03:30a | HM580020 | IN11 | Indonesia | AY340673 (12), DQ363296 (7) | Ch, Vi |
| DRB1*04:05 | HM580077 | DR020 | Vietnam | DQ363260 (7) | Vi |
| DRB1*04:11 | FJ919729 | IN01, IN10 | Indonesia | AM911050 (14), EF175117 (7) | In |
| DRB1*04:14 | HM580015 | CE16 | Indonesia | none | |
| DRB1*07:02:02 | FJ919738 | CE12 | Indonesia | DQ363264 (7), FN433726 (7) | Vi |
| DRB1*10:12 | FJ919737 | IN01 | Indonesia | HM236222 (7) | |
a
Denotes alleles which extended previously available sequence but were not given the same name because it had already been assigned to a different full-length sequence with the same exon 2.
Mafa alleles for which full-length sequence was not previously available, including extensions of previously named alleles. “Both” denotes alleles found in both the Indonesian and Vietnamese cohorts. Identical Mafa sequences for which accession numbers are listed are limited to exon 2 with the exception of the DRA alleles. The origin information for identical Mafa sequences was taken from the corresponding publication(s) and/or GenBank record(s). Abbreviations used are as follows: Ch=China, In=Indonesia, Ph=Philippines, Vi=Vietnam. References for accession numbers are (1) Sano et al. 2006, (2) Doxiadis et al. 2006, (3) Hashiba et al. 1993, (4) Ling et al. 2011, (5) Kenter et al. 1992, (6) Otting et al. 2002, (7) unpublished, various sources (8) Gaur et al. 1992, (9) Senju et al. 2007, (10) Aarnink et al. 2010, (11) Blancher et al. 2006, (12) Leuchte et al. 2004, (13) Mee et al. 2008, (14) De Groot et al. 2008, (15) Wei et al. 2007, (16) Doxiadis et al. 2010.