Table 6. Effect of normalization strategy on statistical parameters calculated for Nppb and Vcam1 expression using single reference genes.
Tpt1 | Hprt | Rpl13a | Ppia | Tbp | Eef1a1 | B2m | Actb | Polr2a | Gapdh | ||
Nppb | p-value | <0.001 | 0.023 | 0.005 | 0.023 | 0.123 | 0.280 | 0.631 | 0.436 | 0.912 | 0.005 |
power | 0.998 | 0.715 | 0.933 | 0.647 | 0.153 | 0.231 | 0.078 | 0.255 | 0.107 | 0.488 | |
n | 5 | 13 | 7 | 14 | 82 | 48 | 296 | 42 | 137 | 20 | |
Vcam1 | p-value | <0.001 | <0.001 | 0.001 | 0.029 | 0.004 | 0.631 | 0.579 | 0.105 | 0.796 | 0.001 |
power | 0.998 | 1 | 0.992 | 0.619 | 0.937 | 0.136 | 0.059 | 0.345 | 0.050 | 0.997 | |
n | 5 | 4 | 6 | 15 | 7 | 96 | 943 | 21 | >1000 | 5 |
Two-tailed Mann-Whitney U test was used for calculating p-values. The statistical power was calculated for a Student's t-test using statistical parameters of log2 transformed expression data. Sample size (n) is number per group needed to obtain a power of at least 0.8. Nppb: group 2 vs. group 3; Vcam1: group 1 vs. group 3.