Table 4.
BLASTX hits of contigs and singletons in the eight individual libraries with different proteomes
| Library | Contigs | |||||||
|---|---|---|---|---|---|---|---|---|
| A. thaliana | V. vinifera | P. trichocarpa | Uniprot | |||||
| %hit | % unique | %hit | % unique | %hit | % unique | %hit | % unique | |
| SlM | 31% | 21% | 31% | 20% | 33% | 23% | 41% | 33% |
| SlF | 76% | 49% | 76% | 46% | 78% | 53% | 78% | 66% |
| SlFf | 35% | 24% | 35% | 24% | 36% | 26% | 56% | 47% |
| SdM | 18% | 13% | 19% | 13% | 22% | 14% | 31% | 22% |
| SdF | 31% | 22% | 31% | 21% | 32% | 24% | 49% | 43% |
| SmM | 55% | 35% | 54% | 33% | 56% | 39% | 57% | 48% |
| SvH | 74% | 48% | 74% | 45% | 76% | 52% | 76% | 64% |
| Ds | 73% | 47% | 73% | 43% | 74% | 51% | 75% | 63% |
| Library | Singletons | |||||||
| A. thaliana | V. vinifera | P. trichocarpa | Uniprot | |||||
| %hit | % unique | %hit | % unique | %hit | % unique | %hit | % unique | |
| SlM | 14% | 9% | 16% | 9% | 21% | 10% | 32% | 19% |
| SlF | 42% | 27% | 44% | 26% | 46% | 31% | 47% | 38% |
| SlFf | 17% | 11% | 18% | 11% | 22% | 12% | 45% | 30% |
| SdM | 10% | 6% | 13% | 6% | 21% | 7% | 32% | 14% |
| SdF | 16% | 10% | 18% | 10% | 22% | 11% | 39% | 25% |
| SmM | 26% | 17% | 28% | 17% | 30% | 20% | 32% | 25% |
| SvH | 44% | 30% | 47% | 29% | 50% | 33% | 55% | 41% |
| Ds | 46% | 33% | 46% | 32% | 48% | 36% | 49% | 42% |
Table 4 shows the number of hits for both contigs and singletons. Non-redundant accessions are recorded in the '% unique' column. A cut-off E-value of 1E-4 was used for each database.