Table 6.
Library SNP content
| Library | SlM | SlF | SlFf | SdM | SdF | SmM | SvH | Ds |
|---|---|---|---|---|---|---|---|---|
| Contigs* | 2909 | 5486 | 2287 | 2993 | 2912 | 4982 | 5028 | 6094 |
| Contigs with SNPs | 1221 | 1517 | 976 | 1333 | 1078 | 1709 | 1619 | 2513 |
| SNPs | 6648 | 6308 | 5576 | 6307 | 4653 | 7361 | 7381 | 12282 |
| Substitutions | 4847 | 5165 | 3873 | 5356 | 3516 | 5681 | 6402 | 9927 |
| % Transitions/transversions | 52/48 | 61/39 | 47/53 | 63/37 | 56/44 | 57/43 | 60/40 | 61/39 |
| % heterozygous positions | 0.39 | 0.19 | 0.43 | 0.38 | 0.28 | 0.26 | 0.27 | 0.32 |
* Only contigs assembled from at least 4 reads were considered. The total length of these contigs was used to calculate the percentage of heterozygous positions. All SNPs that are not due to substitutions are indels.