Table 1.
Genes induced more than 6-fold for planktonic cells of EDL933 vs. 86-24. Cells were grown in LB medium at 37 °C to a turbidity of 4.0.
| gene | fold change | Descriptions |
|---|---|---|
| Shiga-like toxin genes | ||
| stx1B | 5405 | shiga-like toxin 1 subunit B |
| stx1A | 955 | shiga-like toxin 1 subunit A |
| Curli and cellulose genes | ||
| csgA | 49 | curlin major subunit, coiled surface structures |
| csgB | 79 | minor curlin subunit precursor, similar to CsgA |
| csgC | 84 | putative curli production protein |
| csgD | 17 | putative 2-component transcriptional regulator for curli operon |
| csgE | 24 | curli production assembly transport component, |
| csgF | 28 | curli production assembly transport component |
| csgG | 24 | curli production assembly transport component |
| adrA | 8 | regulated by CsgD involved in cellulose biosynthesis |
| Prophage genes and unknown genes | ||
| z1215 | 6 | unknown protein |
| z1218 | 8 | hypothetical protein |
| z1353 | 6 | putative antirepressor protein of cryptic prophage CP-933M |
| z1354 | 9 | putative endopeptidase of cryptic prophage CP-933M |
| z1362 | 6 | unknown protein encoded by cryptic prophage CP-933M |
| z1364 | 6 | unknown protein encoded by cryptic prophage CP-933M |
| z1373 | 23 | unknown protein encoded by cryptic prophage CP-933M |
| z1443 | 362 | unknown protein encoded by bacteriophage BP-933W |
| z1444 | 1911 | putative serinethreonine kinase encoded by bacteriophage BP-933W |
| z1445 | 10,809 | unknown protein encoded by bacteriophage BP-933W |
| z1446 | 1261 | unknown protein encoded by bacteriophage BP-933W |
| z1448 | 256 | regulatory protein Cro of bacteriophage BP-933W |
| z1469 | 158 | putative lysozyme protein R of bacteriophage BP-933W |
| z1663 | 6 | unknown protein |
| z1811 | 137 | putative tail component encoded by prophage CP-933N |
| z1921 | 6 | unknown protein encoded by prophage CP-933X |
| z1957 | 832 | transposase for IS629 |
| z2112 | 37 | putative ClpP-like protease encoded within prophage CP-933O |
| z2113 | 32 | unknown protein encoded within prophage CP-933O |
| z2114 | 891 | unknown protein encoded within prophage CP-933O |
| z2115 | 16 | unknown protein encoded within prophage CP-933O |
| z2116 | 832 | unknown protein encoded within prophage CP-933O |
| z2117 | 30 | unknown protein encoded within prophage CP-933O |
| z3083 | 69 | putative tail fiber component M of prophage CP-933U |
| z3341 | 147 | unknown protein encoded within prophage CP-933V |
| z3342 | 69 | unknown protein encoded within prophage CP-933V |
| z3347 | 147 | unknown protein encoded within prophage CP-933V |
| z3348 | 169 | unknown protein encoded within prophage CP-933V |
| z3357 | 549 | putative regulatory protein CII of prophage CP-933V |
| z3388 | 208 | unknown protein |
| z5148 | 6 | unknown protein |
| z5878 | 69 | putative integrase |
| z5881 | 338 | unknown protein |
| z5882 | 42 | unknown protein |
| z5883 | 7 | unknown protein |
| z5884 | 91 | unknown protein |
| z5885 | 13 | putative resolvase |
| z5886 | 2195 | unknown protein |
| z5887 | 16 | unknown protein |
| z5888 | 119 | unknown protein |
| z5889 | 119 | unknown protein |
| ybcK | 6 | unknown protein |
| ybgS | 8 | unknown protein |
| yccT | 13 | unknown protein |
| yhiM | 9 | unknown protein |
| yibH | 8 | unknown protein |
| yohC | 6 | unknown protein |
| Other genes | ||
| aidB | 6 | putative acyl coenzyme A |
| appB | 12 | probable third cytochrome oxidase, subunit I |
| appC | 12 | probable third cytochrome oxidase, subunit I |
| prpB | 23 | putative phosphonomutase 2 |
| prpC | 17 | putative citrate synthase; propionate metabolism |
| prpD | 21 | hypothetical protein |
| prpE | 18 | putative propionyl-CoA synthetase |
| rpoS | 11 | RNA polymerase, sigma S (sigma38) factor |
| ssuA | 28 | iphatic sulphonate binding protein precursor |
| tfaR | 9 | Rac prophage |