Table 5.

Results of simulated data for non-informative SNPs

SNR	Samples	LOH type	CRP		HMM (dChip)
			TPR	FPR	TPR	FPR
5.00	NA10851	CN = 1	0.9943	0.0013	0.9925	0.0256
		CN = 2	0.9939	0.0014	0.9924	0.0230
	NA12812	CN = 1	0.9943	0.0013	0.9920	0.0248
		CN = 2	0.9940	0.0003	0.9921	0.0228
	NA18605	CN = 1	0.9925	0.0008	0.9917	0.0258
		CN = 2	0.9925	0.0008	0.9916	0.0249
2.00	NA10851	CN = 1	0.9906	0.0026	0.9936	0.0555
		CN = 2	0.9950	0.0041	0.9932	0.0506
	NA12812	CN = 1	0.9955	0.0053	0.9932	0.0573
		CN = 2	0.9952	0.0035	0.9930	0.0543
	NA18605	CN = 1	0.9956	0.0070	0.9935	0.0515
		CN = 2	0.9939	0.0043	0.9929	0.0509
1.25	NA10851	CN = 1	0.9939	0.1469	0.9959	0.2790
		CN = 2	0.9967	0.1054	0.9958	0.2414
	NA12812	CN = 1	0.9963	0.2312	0.9967	0.4088
		CN = 2	0.9991	0.1997	0.9975	0.3614
	NA18605	CN = 1	0.9940	0.1662	0.9967	0.3145
		CN = 2	0.9960	0.1431	0.9953	0.2707