Table 1.
ODN | NaCl | TM | ΔHcal | ΔG°20 | TΔScal | ΔnNa+ | Δnw |
---|---|---|---|---|---|---|---|
(mM) | (°C) | (kcal/mol) | (kcal/mol) | (kcal/mol) | (mol−1 DNA) | (/mol DNA) | |
1 | 10 | 29.5 | −80.1 | −5.6 | −74.5 | −2.2 ± 0.2 | −30 ± 4 |
100 | 53.0 | −72.3 | −8.2 | −64.1 | −1.7 ± 0.1 | −22 ± 3 | |
2 | 10 | 23.2 | −44.4 | −2.3 | −42.1 | −1.7 ± 0.1 | −15 ± 1 |
100 | 39.2 | −33.2 | −3.0 | −30.1 | −1.2 ± 0.1 | −10 ± 1 | |
3 | 10 | 41.0 | −78.2 | −6.9 | −71.3 | −3.4 ± 0.2 | −41 ± 3 |
100 | 59.5 | −92.0 | −12.5 | −79.5 | −3.6 ± 0.2 | −43 ± 4 | |
4 | 10 | 39.4 | −39.3 | −3.2 | −36.1 | −1.0 ± 0.1 | −14 ± 2 |
100 | 51.2 | −39.5 | −4.6 | −35.0 | −0.9 ± 0.1 | −13 ± 2 | |
5 | 10 | 68.4 | −31.0 | −4.4 | −26.6 | −0.3 ± 0.1 | −18 ± 2 |
100 | 69.9 | −27.7 | −4.1 | −23.6 | −0.2 ± 0.1 | −16 ± 1 | |
6 | 10 | 56.5 | −16.6 | −1.8 | −14.8 | −0.3 ± 0.1 | −7 ± 1 |
100 | 61.0 | −7.8 | −1.0 | −6.9 | −0.1 ± 0.1 | −3 ± 1 |
aAll parameters are measured from UV (TM) and DSC melting curves in 10 mM sodium phosphate buffer (pH 7.0) using ∼10 µM DNA. The observed standard deviations are: TM (±0.7), ΔHcal (±3), ΔG°20 (±0.15), TΔScal (±2).