Table 2.

Specific contrasts

Contrast	H0 to test	Interpretation when H0 is rejected and the corresponding log2FC passes the cut-off
preTTA vs. CTR	H0 : PTTA = Pcontr	DE in: Samples pretreated with TTA vs. pretreatment Control
TTA vs. CTR	H0 : TTTA = Tcontr	DE in: Samples treated with TTA vs. Control treated
TTAIC vs. CTR	H0 : TTTA+polyI:C = Tcontr	DE in: Samples treated with TTA+poly(I:C) vs. Control treated
IC vs. CTR	H0 : TpolyI:C = Tcontr	DE in: Samples treated with poly(I:C) vs. Control treated
IC vs. TTAIC	H0 : TTTA+polyI:C = TpolyI:C	DE in: Samples treated with TTA+poly(I:C) vs. poly(I:C) treated

Contrasts, extracted for each probe after the full linear model (Equation 2) was fitted to the data.