Table 1.
Structures and predicted subcellular localization of the CRN protein family in Bd JAM 81.
| JGI IDs | Domain structure | Introns | Scaffold location/gene number in the scaffafold |
ESTs | TargetP | SignalP | iPSORT | ||
|---|---|---|---|---|---|---|---|---|---|
| N- | C- | NN | HMM | ||||||
| 26417 | typeA | DXX DHA | 1 | scaffold_10/377 | _ | _ | _ | ||
| 26603 | typeA | DXX DHA | 2 | scaffold_10/377 | _ | _ | _ | _ | |
| 26694 | DN17 | 0 | scaffold_10/377 | _ | _ | _ | _ | ||
| 90730 | typeA | DXX DHA | 1 | scaffold_10/377 | _ | _ | _ | _ | |
| 90240 | typeA | DXX DHA | 1 | scaffold_9/369 | _ | _ | _ | _ | |
| 26137 | typeA | DXX DHA | 6 | scaffold_9/369 | _ | _ | _ | _ | |
| 26152 | typeA | DXX DHA | 3 | scaffold_9/369 | _ | _ | _ | _ | |
| 26186 | typeA | DXX DHA | 0 | scaffold_9/369 | _ | _ | _ | _ | |
| 90292 | DN17 | 1 | scaffold_9/369 | _ | _ | _ | _ | ||
| 90343 | typeB | DXX DXV | 0 | scaffold_9/369 | 6 | _ | _ | _ | _ |
| 26410 | typeA | DXX DHA | 5 | scaffold_9/369 | _ | _ | _ | _ | |
| 23764 | typeA | DXX DHA | 2 | scaffold_4/596 | 1 | _ | _ | _ | _ |
| 34850 | typeB | DFB | 0 | scaffold_4/596 | 10 | _ | _ | _ | _ |
| 87524 | typeB | DFB | 0 | scaffold_4/596 | 12 | _ | _ | _ | _ |
| 24811 | typeA | DXX DHA | 2 | scaffold_6/516 | _ | _ | _ | _ | |
| 88508 | typeA | DXX DHA | 0 | scaffold_6/516 | 2 | _ | _ | _ | _ |
| 25057 | typeB | DX8 | 0 | scaffold_6/516 | 3 | _ | _ | _ | _ |
| 84882 | typeA | DXX DHA | 0 | scaffold_1/1593 | 1 | _ | _ | _ | _ |
| 84908 | typeA | DXX DHA | 0 | scaffold_1/1593 | _ | _ | _ | _ | |
| 34275 | typeA | DXX DHA | 3 | scaffold_1/1593 | 2 | _ | _ | _ | _ |
| 22414 | typeA | DXX DAB | 1 | scaffold_1/1593 | _ | _ | _ | _ | |
| 85109 | typeA | DXX DHA | 0 | scaffold_1/1593 | 1 | _ | _ | _ | _ |
| 22610 | typeA | DXX DHA | 6 | scaffold_1/1593 | 1 | _ | _ | _ | _ |
| 22615 | typeA | DXX DHA | 1 | scaffold_2/629 | _ | _ | _ | _ | |
| 86546 | typeB | DFA DDC | 0 | scaffold_2/629 | 1 | _ | _ | _ | _ |
| 86517 | DN17 | 1 | scaffold_2/629 | _ | _ | _ | _ | ||
| 36642 | DBE | 0 | scaffold_2/629 | 2 | _ | S | S | _ | |
| 23071 | typeB | DX8 | 4 | scaffold_2/629 | 4 | _ | _ | _ | _ |
| 23077 | typeB | DX8 | 3 | scaffold_2/629 | 3 | _ | _ | _ | _ |
| 23173 | typeA | DXX DAB | 3 | scaffold_2/629 | 1 | _ | _ | _ | _ |
| 23206 | typeA | DXX DHA | 4 | scaffold_3/601 | _ | _ | _ | _ | |
| 23217 | DN17 | 1 | scaffold_3/601 | _ | _ | _ | _ | ||
| 87221 | typeB | DX8 | 0 | scaffold_3/601 | 2 | _ | S | _ | _ |
| 87128 | DN17 | 0 | scaffold_3/601 | _ | _ | _ | _ | ||
| 23760 | typeA | DXX DHA | 1 | scaffold_3/601 | 1 | _ | _ | _ | _ |
| 25252 | typeA | DXX DHA | 5 | scaffold_7/438 | _ | _ | _ | _ | |
| 25352 | typeB | DXX DXV | 0 | scaffold_7/438 | 2 | _ | _ | _ | _ |
| 35207 | DX8 | 1 | scaffold_7/438 | 3 | _ | _ | _ | _ | |
| 37012 | typeB | DFB | 0 | scaffold_7/438 | 10 | _ | _ | _ | _ |
| 25664 | typeA | DXX DXV | 1 | scaffold_7/438 | _ | _ | _ | _ | |
| 91252 | typeA | DXX DHA | 1 | scaffold_12/268 | _ | _ | _ | _ | |
| 91239 | DFB | 1 | scaffold_12/268 | 8 | _ | _ | _ | _ | |
| 91238 | typeA | DXX DHA | 1 | scaffold_12/268 | 1 | _ | _ | _ | _ |
| 27205 | typeA | DXX DHA | 2 | scaffold_12/268 | _ | _ | _ | _ | |
| 35892 | typeB | DFA DDC | 0 | scaffold_12/268 | 6 | _ | _ | _ | _ |
| 91331 | typeA | DXX DHA | 1 | scaffold_12/268 | _ | _ | _ | _ | |
| 89833 | DFB | 0 | scaffold_8/465 | 8 | _ | _ | _ | _ | |
| 89826 | typeA | DXX DHA | 1 | scaffold_8/465 | _ | _ | _ | _ | |
| 24299 | typeA | DXX DHA | 3 | scaffold_5/527 | _ | _ | _ | _ | |
| 24333 | typeB | DFB | 0 | scaffold_5/527 | 14 | _ | _ | _ | _ |
| 24341 | typeA | DXX DAB | 2 | scaffold_5/527 | _ | _ | _ | _ | |
| 36889 | typeB | DFB | 0 | scaffold_5/527 | 12 | _ | _ | _ | _ |
| 87953 | typeB | DFB | 0 | scaffold_5/527 | 13 | _ | S | _ | _ |
| 87954 | typeB | DFB | 0 | scaffold_5/527 | 14 | _ | S | _ | _ |
| 88475 | typeA | DXX DHA | 0 | scaffold_5/527 | _ | _ | _ | _ | |
| 24764 | typeB | DFA DDC | 0 | scaffold_5/527 | 2 | _ | _ | _ | _ |
| 88482 | typeA | DXX DHA | 2 | scaffold_5/527 | 1 | _ | _ | _ | _ |
| 27291 | typeA | DXX DHA | 3 | scaffold_13/279 | _ | _ | _ | _ | |
| 37407 | typeB | DFB | 0 | scaffold_13/279 | 14 | _ | _ | _ | _ |
| 27710 | typeA | DXX DHA | 1 | scaffold_14/258 | 1 | _ | _ | _ | _ |
| 27719 | typeA | DXX DHA | 0 | scaffold_14/258 | _ | _ | _ | _ | |
| 36061 | typeB | DX8 | 0 | scaffold_14/258 | 6 | _ | _ | _ | _ |
| 28349 | typeA | DXX DXV | 1 | scaffold_18/194 | _ | _ | _ | _ | |
| 28355 | typeA | DXX DHA | 0 | scaffold_18/194 | M | _ | _ | _ | |
| 92602 | typeA | DXX DHA | 0 | scaffold_18/194 | _ | _ | _ | _ | |
| 28463 | typeA | DXX DHA | 4 | scaffold_18/194 | _ | _ | _ | _ | |
| 28466 | typeA | DXX DXV | 1 | scaffold_18/194 | 1 | _ | _ | _ | _ |
| 92692 | typeB | DFA DDC | 1 | scaffold_18/194 | 3 | _ | _ | _ | _ |
| 28183 | typeA | DXX DHA | 4 | scaffold_17/196 | _ | _ | _ | _ | |
| 28329 | typeA | DXX DHA | 3 | scaffold_17/196 | _ | _ | _ | _ | |
| 28345 | typeA | DXX DHA | 1 | scaffold_17/196 | _ | _ | _ | _ | |
| 28523 | DXX DHA | 2 | scaffold_19/95 | S | S | _ | _ | ||
| 28594 | DN17 | 3 | scaffold_19/95 | 1 | _ | _ | _ | _ | |
| 28683 | typeA | DXX DHA | 3 | scaffold_20/92 | _ | _ | _ | _ | |
| 28687 | typeA | DXX DHA | 3 | scaffold_20/92 | _ | _ | _ | _ | |
| 26749 | typeA | DXX DHA | 4 | scaffold_11/338 | S | S | _ | _ | |
| 90966 | DX8 | 0 | scaffold_11/338 | 1 | _ | S | _ | _ | |
| 26764 | typeA | DXX DAB | 3 | scaffold_11/338 | _ | _ | _ | _ | |
| 26962 | typeB | DX8 | 0 | scaffold_11/338 | 7 | _ | S | _ | _ |
| 26980 | typeB | DX8 | 0 | scaffold_11/338 | 6 | _ | S | _ | _ |
| 91063 | typeA | DXX DHA | 1 | scaffold_11/338 | 1 | _ | _ | _ | _ |
| 92027 | typeA | DXX DHA | 1 | scaffold_15/227 | _ | _ | _ | _ | |
| 27784 | typeA | DXX DAB | 2 | scaffold_15/227 | _ | _ | _ | _ | |
| 92094 | typeA | DXX DHA | 1 | scaffold_15/227 | _ | _ | _ | _ | |
"Type A" and "Type B" show two different types of conserved N-terminal domains of Bd CRN proteins, whose detailed information is shown in Additional file 5. "M" and "S" show that the protein is likely localized in mitochondria and the secretory pathway, respectively.