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. 2011 Jul 23;11:219. doi: 10.1186/1471-2148-11-219

Table 1.

Distribution of candidate tRNase Zs from representative green plants

Species Protein name  Type Accession number  Database  No. aa+
DICOTS
Aquilegia coerulea AcoTRZ1  TM-type tRNase ZS AcoGoldSmith_v1.019418 m.g  Phytozome  283
Aquilegia coerulea AcoTRZ2  TM-type tRNase ZS AcoGoldSmith_v1.007495 m.g  Phytozome  356
Aquilegia coerulea AcoTRZ3  tRNase ZL AcoGoldSmith_v1.000749 m.g  Phytozome  997*
Aquilegia coerulea AcoTRZ4  tRNase ZL AcoGoldSmith_v1.024294 m.g  Phytozome  848*
Arabidopsis thaliana AthTRZ1  TM-type tRNase ZS NP_177608.2  NCBI  280
Arabidopsis thaliana AthTRZ2  TM-type tRNase ZS NP_178532.2  NCBI  354
Arabidopsis thaliana AthTRZ3  tRNase ZL NP_175628.2  NCBI  890
Arabidopsis thaliana AthTRZ4  tRNase ZL NP_188247.2  NCBI  942
Carica papaya CpaTRZ1  TM-type tRNase ZS evm.TU.supercontig_17.217  Phytozome  306
Carica papaya CpaTRZ2  TM-type tRNase ZS evm.TU.supercontig_132.51  Phytozome  359*
Carica papaya CpaTRZ3  tRNase ZL evm.TU.supercontig_34.31  Phytozome  943*
Citrus clementina CclTRZ1  TM-type tRNase ZS clementine0.9_017657 m.g  Phytozome  288
Citrus clementina CclTRZ2  TM-type tRNase ZS clementine0.9_014182 m.g  Phytozome  355
Citrus clementina CclTRZ3  tRNase ZL clementine0.9_001700 m.g  Phytozome  938
Cucumis sativus CsaTRZ1  TM-type tRNase ZS Cucsa.369470  Phytozome  301*
Cucumis sativus CsaTRZ2  TM-type tRNase ZS Cucsa.185180  Phytozome  347
Cucumis sativus CsaTRZ3  tRNase ZL Cucsa.359360  Phytozome  977
Eucalyptus grandis EgrTRZ1  TM-type tRNase ZS Egrandis_v1_0.020509 m.g  Phytozome  309
Eucalyptus grandis EgrTRZ2  TM-type tRNase ZS Egrandis_v1_0.021229 m.g  Phytozome  357*
Eucalyptus grandis EgrTRZ3  tRNase ZL Egrandis_v1_0.001658 m.g  Phytozome  971
Glycine max GmaTRZ1  TM-type tRNase ZS Glyma20g01480  Phytozome  279
Glycine max GmaTRZ2  TM-type tRNase ZS ACU18735.1  NCBI  353
Glycine max GmaTRZ3  tRNase ZL Glyma13g43270  Phytozome  923*
Glycine max GmaTRZ4  tRNase ZL Glyma15g02070  Phytozome  931*
Mimulus guttatus MguTRZ1  TM-type tRNase ZS mgv1a010642 m.g  Phytozome  306
Mimulus guttatus MguTRZ2  TM-type tRNase ZS mgv1a024577 m.g  Phytozome  364*
Mimulus guttatus MguTRZ3  tRNase ZL mgv1a000815 m.g  Phytozome  976
Vitis vinifera VviTRZ1  TM-type tRNase Z S XP_002273058.1  NCBI  290
Vitis vinifera VviTRZ2  TM-type tRNase Z S XP_002277241.1  NCBI  354
Vitis vinifera VviTRZ3  tRNase ZL XP_002278956.1  NCBI  951

MONOCOTS
Oryza sativa japonica OsaTRZ1  TM-type tRNase ZS NP_001046280.1  NCBI  302
Oryza sativa japonica OsaTRZ2  TM-type tRNase ZS LOC_Os09g30466  Phytozome  365
Oryza sativa japonica OsaTRZ3  tRNase ZL B9EUI7  UniProt  964
Zea mays ZmaTRZ1  TM-type tRNase ZS GRMZM2G147727  Phytozome  302
Zea mays ZmaTRZ2  TM-type tRNase ZS ACG47847.1  NCBI  357
Zea mays ZmaTRZ3  tRNase ZL GRMZM2G379286  Phytozome  930

MOSSES
Physcomitrella patens PpaTRZ1  TM-type tRNase ZS XP_001785449.1  NCBI  295
Physcomitrella patens PpaTRZ2  TM-type tRNase ZS Pp1s17_61V6  Phytozome  420
Physcomitrella patens PpaTRZ3  Bacterial-type tRNase ZS Pp1s409_46V6  Phytozome  336*
Physcomitrella patens PpaTRZ4  tRNase ZL Pp1s126_39V6  Phytozome  984*
Physcomitrella patens PpaTLP1  tRNase ZL-like Pp1s3_568V6  Phytozome  923*

LYCOPHYTES
Selaginella moellendorffii SmoTRZ1  TM-type tRNase ZS 167717  Phytozome  299
Selaginella moellendorffii SmoTRZ2  tRNase ZL 111409  Phytozome  771*
Selaginella moellendorffii SmoTRZ3  tRNase ZL 97243  Phytozome  819*
Selaginella moellendorffii SmoTLP1  tRNase ZS-like 404484  Phytozome  303
Selaginella moellendorffii SmoTLP2  tRNase-like XP_002967989  NCBI  346
Selaginella moellendorffii SmoTLP3  tRNase ZL-like 416540  Phytozome  731

GREEN ALGAE
Chlamydomonas reinhardtii CreTRZ1  TM-type tRNase ZS Cre10.g431400  Phytozome  335
Chlamydomonas reinhardtii CreTRZ2  tRNase ZL Cre01.g039900  Phytozome  880*
Chlamydomonas reinhardtii CreTLP1  tRNase ZS-like Cre12.g492250  Phytozome  425*
Chlamydomonas reinhardtii CreTLP2  tRNase ZS -like Cre07.g321900  Phytozome  378
Chlamydomonas reinhardtii CreTLP3  tRNase ZL-like Cre01.g068350  Phytozome  710*
Chlamydomonas reinhardtii CreTLP4  tRNase ZL-like Cre09.g394700  Phytozome  1073
Micromonas pusilla MpuTRZ1  TM-type tRNase ZS 5692  JGI  383*
Micromonas pusilla MpuTRZ2  Bacterial-type tRNase ZS 18700  JGI  398*
Micromonas pusilla MpuTRZ3  tRNase ZL 54013  JGI  953*
Micromonas pusilla MpuTLP1  tRNase ZL-like C1N4P0  UniProt  866
Ostreococcus lucimarinus OluTRZ1  TM-type tRNase ZS 26345  JGI  313
Ostreococcus lucimarinus OluTRZ2  Bacterial-type tRNase ZS XP_001416263  NCBI  369*
Ostreococcus lucimarinus OluTRZ3  tRNase ZL A4S9E8  UniProt  781*
Ostreococcus lucimarinus OluTLP1  tRNase ZL-like A4RR41  UniProt  780
Volvox carteri VcaTRZ1  TM-type tRNase Z S 80918  Phytozome  308*
Volvox carteri VcaTRZ2  tRNase ZL 118548  Phytozome  881*
Volvox carteri VcaTLP1  tRNase ZS-like 103834  Phytozome  445*
Volvox carteri VcaTLP2  tRNase ZL-like 100314  Phytozome  723*

+The number of amino acids in plant tRNase Z and tRNase Z-like proteins.

*Indicates that mispredicted sequences obtained from the databases have been corrected.