Table 1.
DS_DMEL - Data for putative and known networks obtained with Bio::Homology::InterologWalk
| DS_DMEL Pipeline | ||
|---|---|---|
| Putative | Known | |
| Datasets | ||
| Gene IDs | 14869 | 14869 |
| Reference Genomes | 52 | NA |
| Orthologues (Forward) | 150968 | NA |
| PPIs in Reference Genomes | 37931 | NA |
| Total Interactions | 11316 | 51827 |
| Unique PP Pairs | 4428 | 26622 |
| Surviving IDs (% Gene IDs) | 2188 (14.7) | 7779 (52.3) |
| Networks | ||
| Nodes | 2188 | 7779 |
| Edges | 4428 | 26622 |
The table shows a comparison of the PPI datasets and networks obtained for the Drosophila melanogaster interactome dataset (DS_DMEL). Results obtained using the two available
Bio::Homology::InterologWalk pipelines - putative and experimental - are shown. In the putative pipeline, the data shown are relative to interactions obtained through interolog mapping. In the experimental pipeline, the initial dataset has been queried against EBI Intact to gather all known, experimental molecular associations available. The field 'Total Interactions' indicates the total number of final entries of the form I = (genex, geney) obtained. Since I can be observed several times through different orthology paths, the field Unique PP Pairs shows the number of unique (genex, geney) pairs observed.