Table 1.
Relative expression levels of loci associated to PocR and not within its flanking regiona.
| Locus | Function | Mb. | pc. | Accession number |
|---|---|---|---|---|
| Lreu_0088 | Transcriptional regulator, LacI family | 1.11 | 0.03 | gi|148543330 |
| Lreu_0103 | 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) | 0.89 | 0.03 | gi|148543342 |
| Lreu_0429 | Putative cobalt-transporting ATPased. | 1.85 | 0.00 | gi|148543665 |
| Lreu_0430 | Putative cobalt-transporting ATPased. | 1.76 | 0.00 | gi|148543666 |
| Lreu_0479 | Arabinose-proton symporter | 1.67 | 0.00 | gi|148543714 |
| Lreu_0631 | Pyruvate dehydrogenase alpha subunit (EC 1.2.4.1) | 0.88 | 0.02 | gi|148543863 |
| Lreu_0632 | Pyruvate dehydrogenase beta subunit (EC 1.2.4.1) | 0.86 | 0.04 | gi|148543864 |
| Lreu_0633 | Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12) | 0.81 | 0.03 | gi|148543865 |
| Lreu_0910 | Alpha-galactosidase (EC 3.2.1.22) | 0.90 | 0.03 | gi|148544139 |
| Lreu_1007 | Transcription regulator, Crp family | -0.82 | 0.04 | gi|148544234 |
| Lreu_1531 | Fumarate hydratase (EC 4.2.1.2) | 1.09 | 0.05 | gi|148544743 |
| Lreu_1768 | Lactose permease | 0.97 | 0.05 | gi|148544974 |
| Lreu_1832 | Histidine decarboxylase (EC 4.1.1.22) | -1.67 | 0.03 | gi|148545038 |
a. Genes predicted to encode phage-related proteins, recombinases, mobile elements, DNA repair and general or unknown functions were omitted (for full list, please see Additional file 1, Table S1)
b. M, log2(intensity of signal of L. reuteri pNZ7748/intensity of signal of L. reuteri pNZ7021).
c. p, p-value.
d. Annotated as hypothetical protein in GenBank and as copper-transporting ATPase (EC 3.6.3.10) in ERGO database [16].