Table 2.
Reaction inhibition, fluorescent signal, and melting temperature data: tropomyosin amplicon
Dye | Optimal Concentration |
Ct: 0.64 μM (0.32×) |
Ct: 2 μM (1×) |
Ct: 10 μM (5×) |
Ct: 20 μM (10×) |
Maximum Fluorescence |
Tm shift slope (R2) |
---|---|---|---|---|---|---|---|
SYBR Green* | 0.64 μM | 33.00 ± 0.10 | 35.07 ± 1.10 | no Ct | no Ct | 1.00 | 3.99, × conc. 1.99, μM conc. (0.97) |
EvaGreen* | 5× | 36.37 ± 0.48 | 35.04 ± 0.35 | 35.15 ± 1.13 | not determined | 0.91 | 0.36 (0.98) |
Green* | |||||||
SYTO 11 | 2 μM | 38.02 ± 0.97 | 36.42 ± 0.84 | 38.17 ± 1.03 | 42.27 ± 0 | 0.51 | -0.20 (0.12) |
SYTO 13 | 10 μM | 37.58 ± 1.33 | 36.10 ± 1.32 | 36.06 ± 1.55 | 36.45 ± 2.06 | 0.87 | 0.001 (0.00) |
SYTO 16 | 10 μM | 37.00 ± 1.86 | 34.20 ± 1.05 | 34.04 ± 0.96 | 34.97 ± 0.53 | 1.07 | 0.030 (0.004) |
SYTO 21 | 0.64 μM | 34.55 ± 1.07 | 35.90 ± 0.83 | no Ct | no Ct | 0.82 | 0.62 (0.03) |
SYTO 24 | 0.64 μM | 33.50 ± 0.01 | no Ct | no Ct | no Ct | 1.02 | not determined |
Orange* | |||||||
SYTO 80 | 20 μM | 39.16 ± 2.44 | 37.33 ± 1.86 | 35.84 ± 0.02 | 34.78 ± 0.08 | 0.40 | 0.048 (0.008) |
SYTO 81 | 20 μM | 43.89 ± 0.10 | 40.62 ± 1.39 | 37.02 ± 0.39 | 36.45 ± 0.21 | 0.11 | 0.026 (0.002) |
SYTO 82 | 20 μM | 37.18 ± 1.85 | 35.59 ± 0.95 | 33.50 ± 0.11 | 33.44 ± 0.51 | 0.61 | -0.17 (0.10) |
SYTO 83 | 20 μM | 42.20 ± 0.01 | 39.28 ± 0.99 | 37.04 ± 0.13 | 35.92 ± 0.93 | 0.10 | 0.037 (0.0051) |
Red* | |||||||
SYTO 17 | 20 μM | no Ct | 42.26 ± 0.02 | 36.18 ± 0.14 | 35.32 ± 0.41 | 0.03 | 0.0009 (0.0005) |
SYTO 59 | 10 μM | 35.63 ± 0.09 | 35.15 ± 1.50 | 33.70 ± 0.10 | 35.53 ± 0.53 | 0.20 | 0.11 (0.83) |
SYTO 60 | 2 μM | 34.85 ± 0.41 | 34.29 ± 0.31 | 41.09 ± 1.97 | no Ct | 0.13 | 0.064 (0.10) |
SYTO 61 | 10 μM | 37.45 ± 1.68 | 35.38 ± 0.57 | 34.14 ± 0.98 | 35.00 ± 1.19 | 0.14 | 0.043 (0.58) |
SYTO 62 | 0.64 μM | 33.98 ± 0.42 | 33.69 ± 0.75 | no Ct | no Ct | 0.17 | 0.035 (0.008) |
SYTO 63 | 2 μM | 34.78 ± 0.41 | 34.50 ± 0.31 | 37.07 ± 0.07 | no Ct | 0.12 | 0.24 (0.85) |
SYTO 64 | 2 μM | 36.22 ± 0.10 | 36.68 ± 1.62 | 36.31 ± 1.05 | 36.48 ± 0.95 | 0.05 | -0.004 (0.013) |
No fluorescent signals were obtained for SYTO dyes 12, 14, 25, 84, or 85
*Ct values are average ± SD for at 2-3 independent experiments