Table III.
Oligonucleotides used for PCR amplification and sequencing
Name | Sequence | Purpose |
---|---|---|
LC1 | 5′-AACCAGGGCGTATCTCTTCATAGC-3′ | TAIL-PCR or iPCR at RB |
LC2 | 5′-TTATGCAGTTGCTCTCCAGCGG-3′ | TAIL-PCR or iPCR at RB |
LC3 | 5′-CCTTTCTTTATGTTTTTGGCG-3′ | Sequencing at RB |
LCE | 5′-TTTGTACCAGAGTCCTTTGATCGTG-3′ | iPCR at RB, used with LC1 |
LB11 | 5′-CAGACCAATCTGAAGATGAAATGGGTATCTGGG-3′ | TAIL-PCR or iPCR at LB |
LB21 | 5′-GTGAAGTTTCTCATCTAAGCCCCCATTTGG-3′ | TAIL-PCR or iPCR at LB |
LB41 | 5′-TTCTCCATATTGACCATCATACTCATTGC-3′ | Squencing at LB |
PB | 5′-CACATTTCCCCGAAAAGTGCCACCTGACG-3′ | iPCR at LB, used with LB21 |
213R | 5′-CAGCGAGGCGGCTAGCTA-3′ | L213 line segregation test |
L0211A | 5′-AAGGGTTAAGTGCTCCGCCA-3′ | RT-PCR, At5g20380 forward |
L0211B | 5′-ACCAACCCAGCCACAGATGA-3′ | RT-PCR, At5g20380 reverse |
L0213A | 5′-GAGATGGAGATAGAAGCAAGCAG-3′ | RT-PCR At1g17840 forward |
L0213B | 5′-TTGCGGCCGTTAAGAAGAA-3′ | RT-PCR At1g17840 reverse |
L0264A | 5′-TCGCCGTTGCTGAGTTGAGA-3′ | RT-PCR At2g39190 forward |
L0264B | 5′-AGGAAGGCTGAGGCCAAGAT-3′ | RT-PCR At2g39190 reverse |
L0610A | 5′-CAACAACAAGAACAATGAGAGC-3′ | RT-PCR At1g56045 forward |
L0610B | 5′-AGATAAGAGCACAAGAGCAAGT-3′ | RT-PCR At1g56045 reverse |
L1551A | 5′-AACGCCGTGGAACAGGTGAT-3′ | RT-PCR At4g35260 forward |
L1551B | 5′-ACCAGGAACAACCTCGTGCT-3′ | RT-PCR At4g35260 reverse |
L1571A | 5′-TAATCGGCGATGTTGGAGCTGA-3′ | RT-PCR AT1G12830 forward |
L1571B | 5′-TCGTTGACATGGCGGTTACTGA-3′ | RT-PCR AT1G12830 reverse |
L3033A | 5′-AGGCGCGCAAATTACCCAAT-3′ | RT-PCR At2g01010 forward |
L3033B | 5′-TCTTCAAAGTAACAGCGCCGGA-3′ | RT-PCR At2g01010 reverse |
L3051A | 5′-ACCATTGTGGCTCTGACGAAGA-3′ | RT-PCR At1g17690 forward |
L3051B | 5′-ACAACGCGAAAGGCAATGCT-3′ | RT-PCR At1g17690 reverse |