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. 2011 May 21;3:723–736. doi: 10.1093/gbe/evr042

Table 2.

Substitutions and Indels in Beta mt Genes (Macro Corresponds to Beta macrocarpa)

Genes Position in TK81-O Genome Genomes
TK81-O TK81-MS A B CMS-E CMS-G Macro
atp1 1386 gaT → D gaT → D gaT → D gaT → D gaT → D gaG → E gaT → D
atp6 First 1,146 bp specific to TK81-MS and CMS-E First 1,152 bp specific to TK81-MS and CMS-E
1–3 Acg → M Gcg → A Acg → M Acg → M Gcg → A Acg → M Acg → M
4–6 ATT → I GGA → G ATT → I ATT → I GGA → G ATT → I ATT → I
7–9 Acg → T CGg → R Acg → T ACg → T CGg → R ACg → T ACg → T
10–12 CCc → P ATc → I CCc → P CCc → P ATc → I CCc → P CCc → P
13–15 AAc → N CCc → P AAc → N AAc → N CCc → P AAc → N AAc → N
19–22 ccA → P ccC → P ccA → P ccA → P ccG → P ccA → P ccA → P
23–26 ctT → L ctA → L ctT → L ctT → L ctA → L ctT → L ctT → L
264 gtT → V gtT → V gtT → V gtT → V gtG → V gtT → V gtT → V
489 ccT → P ccC → P ccT → P ccT → P ccT → P ccT → P ccT → P
ccmFC exon1 306 ttA → L ttA → L ttA → L ttA → L ttA → L ttC → F ttA → L
ccmFC exon2 288 cCa → P cCa → P cCa → P cCa → P cCa → P cAa → Q cCa → P
cox1 1–3 AtG → M AtG → M AtG → M AtG → M AtG → M TtT → Fa AtG → M
14 gTt → V gTt → V gTt → V gTt → V gTt → V gAt → D gTt → V
131 cGa → R cGa → R cGa → R cGa → R cGa → R cAa → Q cGa → R
153 ggT → G ggC → G ggT → G ggT → G ggT → G ggT → G ggT → G
966 atC → I atA → I atC → I atC → I atC → I atC → I atC → I
1179 gcA → A gcG → A gcA → A gcA → A gcA → A gcA → A gcA → A
1206 atC → I atA → I atC → I atC → I atC → I atC → I atC → I
1207 Ttt → F Ttt → F Ttt → F Ttt → F Ttt → F Gtt → V Ttt → F
cox2 Exon2 376 tTa → L tTa → Lb tTa → L tTa → L tTa → L tGa → c tTa → L
cox3 151 Att → I Att → I Att → I Att → I Att → I Ctt → L Att → I
mat-r 750 aaT → N aaT → N aaT → N aaT → N aaG → K aaT → N aaT → N
1086 gtC → V gtA → V gtC → V gtC → V gtC → V gtC → V gtC → V
1215 aaT → N aaG → K aaT → N aaT → N aaT → N aaT → N aaT → N
nad1 Exon1 7 Ata → T Ata → T Ata → T Ata → T Ata → T Gta → V Ata → T
nad1 Exon3 160–161 CGt → R GCt → A GCt → A GCt → A GCt → A GCt → A GCt → A
nad2 Exon4 14 ccC → P ccT → P ccT → P ccT → P ccT → P ccT → P ccT → P
74 atA → I atA → I atA → I atA → I atA → I atC → I atA → I
nad4L 17 tAt → Y tAt → Y tAt → Y tAt → Y tAt → Y tTt → F tAt → Y
19 Ttt → F Ttt → F Ttt → F Ttt → F Ttt → F Gtt → V Ttt → F
nad5 Exon1 13 Atc → I Atc → I Atc → I Atc → I Ctc → L Atc → I Atc → I
nad5 Exon4 3 Aat → N Cat → H Aat → N Aat → N Aat → N Cat → H Aat → N
nad7 Exon1 15 atC → I atC → I atC → I atC → I atC → I atG → M atC → I
nad9 59 aAa → K aAa → K aAa → K aAa → K aAa → K aCa → T aAa → K
66 atA → I atC → I atA → I atA → I atA → I atA → I atA → I
74 tCa → S tCa → S tCa → S tCa → S tCa → S tTa → L tCa → S
118 Caa → Q Aaa → K Caa → Q Caa → Q Caa → Q Caa → Q Caa → Q
261 cgG → R cgC → R cgC → R cgC → R cgC → R cgC → R cgC → R
262 Cta → L Gta → V Gta → V Gta → V Gta → V Gta → V Gta → V
318 ccA → P ccA → P ccA → P ccA → P ccA → P ccG → P ccA → P
525 ttT → F ttT → F ttT → F ttT → F ttT → F ttG → L ttT → F
559 Cgt → R Cgt → R Cgt → R Cgt → R Cgt → R Ggt → G Cgt → R
557 Taa → c Taa → c Taa → c Taa → c Taa → c Gaa → Ed Taa → c
atp4 463 Cac → H Cac → H Cac → H Cac → H Cac → H Aac → N Cac → H
rps3 85 Agt → S Ggt → G Agt → S Agt → S Agt → S Ggt → G Agt → S
106 Ctc → L Atc → I Atc → I Atc → I Atc → I Atc → I Atc → I
755 tCc → S tTc → F tTc → F tTc → F tTc → F tTc → F tTc → F
1106 aTa → I aTa → I aTa → I aTa → I aTa → I aGa → R aTa → I
1232 aTa → I aGa → R aTa → I aTa → I aTa → I aGa → R aTa → I
1240 Gct → A Cct → P Gct → A Gct → A Gct → A Cct → P Gct → A
rps4 103 Aag → K Gag → E Aag → K Aag → K Aag → K Aag → K Aag → K
527 cTg → L cGg → R cTg → L cTg → L cTg → L cTg → L cTg → L
573 cgC → R cgC → R cgC → R cgC → R cgC → R cgA → R cgC → R
745–746 TAt → Y GAt → D TCt → S TCt → S TAt → Y TAt → Y TAt → Y
rps7 198 gtC → V gtA → V gtC → V gtC → V gtA → V gtA → V gtC → V
rps12 269 tCg → S tTg → L tCg → S tCg → S tCg → S tCg → S tCg → S
326 gAt → D gGt → G gAt → D gAt → D gAt → D gAt → D gAt → D
tatC 323 aGa → R aGa → R aGa → R aGa → R aGa → R aGa → R aTa → I
567 tcT → S tcC → S tcT → S tcT → S tcT → S tcT → S tcT → S
a

Undefined start codon (beginning 408 bp before or 87 bp after).

b

Two copies, one is identical to Nv and the other have the first 198 bp identicals and 506 bp unique.

c

Stop codon

d

Leading to supplementary 42 bp.