Table 2.

Substitutions and Indels in Beta mt Genes (Macro Corresponds to Beta macrocarpa)

Genes	Position in TK81-O Genome	Genomes
		TK81-O	TK81-MS	A	B	CMS-E	CMS-G	Macro
atp1	1386	gaT → D	gaT → D	gaT → D	gaT → D	gaT → D	gaG → E	gaT → D
atp6			First 1,146 bp specific to TK81-MS and CMS-E			First 1,152 bp specific to TK81-MS and CMS-E
	1–3	Acg → M	Gcg → A	Acg → M	Acg → M	Gcg → A	Acg → M	Acg → M
	4–6	ATT → I	GGA → G	ATT → I	ATT → I	GGA → G	ATT → I	ATT → I
	7–9	Acg → T	CGg → R	Acg → T	ACg → T	CGg → R	ACg → T	ACg → T
	10–12	CCc → P	ATc → I	CCc → P	CCc → P	ATc → I	CCc → P	CCc → P
	13–15	AAc → N	CCc → P	AAc → N	AAc → N	CCc → P	AAc → N	AAc → N
	19–22	ccA → P	ccC → P	ccA → P	ccA → P	ccG → P	ccA → P	ccA → P
	23–26	ctT → L	ctA → L	ctT → L	ctT → L	ctA → L	ctT → L	ctT → L
	264	gtT → V	gtT → V	gtT → V	gtT → V	gtG → V	gtT → V	gtT → V
	489	ccT → P	ccC → P	ccT → P	ccT → P	ccT → P	ccT → P	ccT → P
ccmFC exon1	306	ttA → L	ttA → L	ttA → L	ttA → L	ttA → L	ttC → F	ttA → L
ccmFC exon2	288	cCa → P	cCa → P	cCa → P	cCa → P	cCa → P	cAa → Q	cCa → P
cox1	1–3	AtG → M	AtG → M	AtG → M	AtG → M	AtG → M	TtT → Fa	AtG → M
	14	gTt → V	gTt → V	gTt → V	gTt → V	gTt → V	gAt → D	gTt → V
	131	cGa → R	cGa → R	cGa → R	cGa → R	cGa → R	cAa → Q	cGa → R
	153	ggT → G	ggC → G	ggT → G	ggT → G	ggT → G	ggT → G	ggT → G
	966	atC → I	atA → I	atC → I	atC → I	atC → I	atC → I	atC → I
	1179	gcA → A	gcG → A	gcA → A	gcA → A	gcA → A	gcA → A	gcA → A
	1206	atC → I	atA → I	atC → I	atC → I	atC → I	atC → I	atC → I
	1207	Ttt → F	Ttt → F	Ttt → F	Ttt → F	Ttt → F	Gtt → V	Ttt → F
cox2 Exon2	376	tTa → L	tTa → Lb	tTa → L	tTa → L	tTa → L	tGa → c	tTa → L
cox3	151	Att → I	Att → I	Att → I	Att → I	Att → I	Ctt → L	Att → I
mat-r	750	aaT → N	aaT → N	aaT → N	aaT → N	aaG → K	aaT → N	aaT → N
	1086	gtC → V	gtA → V	gtC → V	gtC → V	gtC → V	gtC → V	gtC → V
	1215	aaT → N	aaG → K	aaT → N	aaT → N	aaT → N	aaT → N	aaT → N
nad1 Exon1	7	Ata → T	Ata → T	Ata → T	Ata → T	Ata → T	Gta → V	Ata → T
nad1 Exon3	160–161	CGt → R	GCt → A	GCt → A	GCt → A	GCt → A	GCt → A	GCt → A
nad2 Exon4	14	ccC → P	ccT → P	ccT → P	ccT → P	ccT → P	ccT → P	ccT → P
	74	atA → I	atA → I	atA → I	atA → I	atA → I	atC → I	atA → I
nad4L	17	tAt → Y	tAt → Y	tAt → Y	tAt → Y	tAt → Y	tTt → F	tAt → Y
	19	Ttt → F	Ttt → F	Ttt → F	Ttt → F	Ttt → F	Gtt → V	Ttt → F
nad5 Exon1	13	Atc → I	Atc → I	Atc → I	Atc → I	Ctc → L	Atc → I	Atc → I
nad5 Exon4	3	Aat → N	Cat → H	Aat → N	Aat → N	Aat → N	Cat → H	Aat → N
nad7 Exon1	15	atC → I	atC → I	atC → I	atC → I	atC → I	atG → M	atC → I
nad9	59	aAa → K	aAa → K	aAa → K	aAa → K	aAa → K	aCa → T	aAa → K
	66	atA → I	atC → I	atA → I	atA → I	atA → I	atA → I	atA → I
	74	tCa → S	tCa → S	tCa → S	tCa → S	tCa → S	tTa → L	tCa → S
	118	Caa → Q	Aaa → K	Caa → Q	Caa → Q	Caa → Q	Caa → Q	Caa → Q
	261	cgG → R	cgC → R	cgC → R	cgC → R	cgC → R	cgC → R	cgC → R
	262	Cta → L	Gta → V	Gta → V	Gta → V	Gta → V	Gta → V	Gta → V
	318	ccA → P	ccA → P	ccA → P	ccA → P	ccA → P	ccG → P	ccA → P
	525	ttT → F	ttT → F	ttT → F	ttT → F	ttT → F	ttG → L	ttT → F
	559	Cgt → R	Cgt → R	Cgt → R	Cgt → R	Cgt → R	Ggt → G	Cgt → R
	557	Taa → c	Taa → c	Taa → c	Taa → c	Taa → c	Gaa → Ed	Taa → c
atp4	463	Cac → H	Cac → H	Cac → H	Cac → H	Cac → H	Aac → N	Cac → H
rps3	85	Agt → S	Ggt → G	Agt → S	Agt → S	Agt → S	Ggt → G	Agt → S
	106	Ctc → L	Atc → I	Atc → I	Atc → I	Atc → I	Atc → I	Atc → I
	755	tCc → S	tTc → F	tTc → F	tTc → F	tTc → F	tTc → F	tTc → F
	1106	aTa → I	aTa → I	aTa → I	aTa → I	aTa → I	aGa → R	aTa → I
	1232	aTa → I	aGa → R	aTa → I	aTa → I	aTa → I	aGa → R	aTa → I
	1240	Gct → A	Cct → P	Gct → A	Gct → A	Gct → A	Cct → P	Gct → A
rps4	103	Aag → K	Gag → E	Aag → K	Aag → K	Aag → K	Aag → K	Aag → K
	527	cTg → L	cGg → R	cTg → L	cTg → L	cTg → L	cTg → L	cTg → L
	573	cgC → R	cgC → R	cgC → R	cgC → R	cgC → R	cgA → R	cgC → R
	745–746	TAt → Y	GAt → D	TCt → S	TCt → S	TAt → Y	TAt → Y	TAt → Y
rps7	198	gtC → V	gtA → V	gtC → V	gtC → V	gtA → V	gtA → V	gtC → V
rps12	269	tCg → S	tTg → L	tCg → S	tCg → S	tCg → S	tCg → S	tCg → S
	326	gAt → D	gGt → G	gAt → D	gAt → D	gAt → D	gAt → D	gAt → D
tatC	323	aGa → R	aGa → R	aGa → R	aGa → R	aGa → R	aGa → R	aTa → I
	567	tcT → S	tcC → S	tcT → S	tcT → S	tcT → S	tcT → S	tcT → S

^aUndefined start codon (beginning 408 bp before or 87 bp after).

^bTwo copies, one is identical to Nv and the other have the first 198 bp identicals and 506 bp unique.

^cStop codon

^dLeading to supplementary 42 bp.