. Author manuscript; available in PMC: 2011 Dec 30.

Published in final edited form as: Nature. 2011 Jun 29;474(7353):609–615. doi: 10.1038/nature10166

Table 1. Characterization platforms used and data produced.

Data Type	Platforms	Cases	Data Availability
DNA Sequence of exome	Illumina GAIIx^a,b ABI SOLiD^c	236 80	Protected Protected
Mutations present in exome		316	Open
DNA copy number/genotype	Agilent 244K^d,e Agilent 415K^d Agilent 1M^e Illumina 1MDUO^f Affymetrix SNP6^a	97 304 539 535 514	Open Open Open Protected Protected
mRNA expression profiling	Affymetrix U133A^a Affymetrix Exon^g Agilent 244K^h	516 517 540	Open Protected Open
Integrated mRNA expression		489	Open
miRNA expression profiling	Agilent^h	541	Open
CpG DNA methylation	Illumina 27K¹	519	Open
Integrative analysis		489	Open
Integrative analysis w/ mutations		309	Open

Production Centers: Broad Institute, Washington University School of Medicine, Baylor College of Medicine, Harvard Medical School, Memorial Sloan-Kettering Cancer Center, HudsonAlpha Institute for Biotechnology, Lawrence Berkeley National Laboratory, University of North Carolina, University of Southern California.

Additional data are available for many of these data types at the TCGA DCC.