Table 2.
Direction of replication (LES ) | |||||||
A | T | G | C | GC-skewa | AT-skewb | ||
GENOME | Total all positions | 1195416 | 1209853 | 478529 | 420990 | 0.06397 | 0.006 |
NON-CODING | Total all positions | 184194 | 192313 | 51170 | 45319 | 0.06064 | 0.02156 |
Direction of transcription (Genes) | |||||||
LES | A | T | G | C | GC-skewa | AT-skewb | |
Total all positions | 632324 | 533506 | 287359 | 180355 | 0.22878 | -0.08476 | |
Position 1 | 210835 | 119494 | 165285 | 48912 | 0.5433 | -0.27652 | |
Position 2 | 208733 | 172083 | 67699 | 96001 | -0.17289 | -0.09624 | |
Position 3 | 212756 | 241929 | 54375 | 35442 | 0.2108 | 0.06416 | |
Synonymous position 3 | 61155 | 95518 | 6848 | 9425 | -0.15836 | 0.21933 | |
LAS | A | T | G | C | GC-skewa | AT-skewb | |
Total all positions | 484034 | 378898 | 195316 | 140000 | 0.16497 | -0.12184 | |
Position 1 | 159165 | 87186 | 116357 | 36711 | 0.52033 | -0.29218 | |
Position 2 | 153962 | 126972 | 47711 | 70771 | -0.19463 | -0.09607 | |
Position 3 | 170907 | 164740 | 31248 | 32518 | -0.01992 | -0.01837 | |
Synonymous position 3 | 49883 | 63604 | 4059 | 7941 | -0.3235 | 0.1209 | |
LES+LAS | |||||||
A | T | G | C | GC-skewa | AT-skewb | ||
Total all positions | 1116358 | 912404 | 482675 | 320355 | 0.20213 | -0.10053 | |
Position 1 | 370000 | 206680 | 281642 | 85623 | 0.53373 | -0.28321 | |
Position 2 | 362695 | 299055 | 115410 | 166772 | -0.18202 | -0.09617 | |
Position 3 | 383663 | 406669 | 85623 | 67960 | 0.11501 | 0.02911 | |
Synonymous position 3 | 111038 | 159122 | 10907 | 17366 | -0.22845 | 0.17798 |
a Calculated as (G-C)/(G+C)
b Calculated as (T-A)/(T+A)