Table 1.
Genome segment and strain | % Nucleotide and amino acid sequence identities | ||||
---|---|---|---|---|---|
XJ0708 | XJ0625 | XJ0710 | Bardos 92 | Lumbo | |
Small† | |||||
XJ0708 | 99.2 | 99.3 | 92.5 | 90.5 | |
XJ0625 | 100 | 99.6 | 91.8 | 90.5 | |
XJ0710 | 100 | 100 | 91.9 | 90.5 | |
Bardos 92 | 97.4 | 97.4 | 97.4 | 89 | |
Lumbo | 96.6 | 96.6 | 96.6 | 95.7 | |
Medium | |||||
XJ0708 | 80.8 | 80.9 | 80.5 | 79.7 | |
XJ0625 | 92.6 | 96.2 | 81.9 | 79.4 | |
XJ0710 | 92.8 | 99 | 82.2 | 79.9 | |
Bardos 92 | 92.6 | 94 | 94.2 | 80.8 | |
Lumbo | 89.1 | 89.1 | 89.3 | 89.1 | |
Large‡ | |||||
XJ0708 | 97.4 | 96.8 | 82.6 | ||
XJ0625 | 99.5 | 96.7 | 82.9 | ||
XJ0710 | 99.7 | 99.7 | 83.1 | ||
Bardos 92 | 97.1 | 97.1 | 97.3 |
% nucleotide sequence identities are shown above the diagonal, and % amino acid sequence identities are shown below the diagonal for each matrix. Values in bold represent comparisons between isolate XJ0708 from China and other Tahyna virus strains.
Compared regions include the nucleocapsid protein, the entire polyprotein open reading frame (Gn and Gc), and the polymerase open reading frame for the small, medium, and large segments, respectively.
Large segment data were not available for the Tahyna virus variant Lumbo strain.