Table 2.

Average prediction accuracy using DisCutoff = 14 Å for TM3-5 proteins. The numbers in parenthesis are for DisCutoff = 15 Å. Second column shows the accuracy for Primary contact using MIN-1N probability set, and third column shows the accuracy for Wheel contact using MIN-1N probability set.

Protein	MIN-1N(P)	MIN-1N(W)	AL-P	MIN-2N	AL-T
1JB0L	0.85(0.89)	0.92(1.00)	0.95(1.00)	0.91(0.91)	0.88(0.94)
1NEKC	0.79(0.79)	0.80(0.87)	0.51(0.65)	0.85(0.92)	0.50(0.57)
1NEKD	0.78(0.78)	0.79(0.79)	0.55(0.55)	0.62(0.62)	0.51(0.53)
1VF5B	0.18(0.18)	0.12(0.26)	0.18(0.18)	0.26(0.32)	0.10(0.12)
2B76C	0.15(0.15)	0.16(0.33)	0.25(0.25)	0.24(0.24)	0.11(0.11)
2B76D	0.52(0.65)	0.93(0.93)	0.68(0.68)	0.46(0.49)	0.38(0.38)
2BHWA	0.16(0.16)	0.14(0.14)	0.24(0.36)	0.22(0.24)	0.48(0.50)
2FBWC	0.51(0.51)	0.48(0.55)	0.47(0.50)	0.41(0.41)	0.33(0.39)
2FBWD	0.75(0.78)	0.87(0.87)	0.48(0.58)	0.50(0.64)	0.53(0.53)
2OAUA	0.41(0.44)	0.36(0.52)	0.51(0.61)	0.44(0.46)	0.37(0.38)
1KQFC	0.53(0.63)	0.69(0.72)	0.48(0.57)	0.59(0.74)	0.52(0.56)
1ORQC	0.29(0.32)	0.18(0.30)	0.12(0.14)	0.31(0.31)	0.24(0.30)
1VF5A	0.44(0.52)	0.56(0.65)	0.56(0.61)	0.61(0.75)	0.65(0.81)
1YEWC	0.79(0.87)	0.76(0.79)	0.64(0.70)	0.24(0.47)	0.37(0.66)
2A79B	0.19(0.19)	0.19(0.19)	0.05(0.05)	0.31(0.37)	0.38(0.38)
2BG9A	0.45(0.51)	0.63(0.66)	0.58(0.61)	0.66(0.70)	0.56(0.75)
2BL2A	0.98(1.00)	0.69(0.79)	0.79(0.79)	0.95(0.95)	0.91(0.92)
2HI7B	0.25(0.27)	0.38(0.42)	0.22(0.28)	0.65(0.65)	0.36(0.42)
2UUHA	0.62(0.62)	0.61(0.66)	0.75(0.78)	0.55(0.61)	0.70(0.77)
1AIGL	0.51(0.51)	0.41(0.41)	0.30(0.51)	0.64(0.64)	0.49(0.51)
1EYSM	0.23(0.38)	0.47(0.52)	0.57(0.61)	0.34(0.44)	0.56(0.67)
1FFTC	0.35(0.42)	0.53(0.59)	0.36(0.39)	0.71(0.79)	0.53(0.71)
1Q16C	0.45(0.62)	0.56(0.62)	0.29(0.40)	0.70(0.76)	0.68(0.74)
2AXTA	0.59(0.62)	0.55(0.57)	0.55(0.58)	0.57(0.61)	0.46(0.50)
2AXTD	0.40(0.40)	0.53(0.53)	0.56(0.61)	0.54(0.55)	0.50(0.55)
2BS2C	0.20(0.44)	0.08(0.24)	0.31(0.35)	0.65(0.87)	0.70(0.82)
Avg.	0.48(0.53)	0.52(0.57)	0.46(0.51)	0.54(0.59)	0.49(0.56)