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. Author manuscript; available in PMC: 2012 Aug 1.
Published in final edited form as: Proteins. 2011 Jun 2;79(8):2455–2466. doi: 10.1002/prot.23069

Table 1.

Data collection and refinement statistics for GDPMK wild type and its mutants

Crystal wt + tartrate D152A plus GDP-mannose E100A (grown for 3 weeks) E100A plus GDP-mannose (grown for 24 hrs)
Space group C2221 P212121 P212121 P21
Cell dimensions a = 75.3 Å a = 58.9 Å a=60.3 a=54.2
b = 103.2 Å b = 69.3 Å b=69.2 b=55.8
c = 254.5 Å c = 99.6 Å c=98.5 c=158.1
α=b=γ = 90° α=b=γ = 90° α=b=γ = 90° α=γ = 90°
b=91.7
Data Collection Statistics
Wavelength (Å) 0.9809 1.54 0.9787
Resolution(Å) 30.0-2.5 50.0-2.03 50.0-2.1 50.0-2.45
(HighRes shell)a (2.54-2.50) (2.10-2.03) (2.18-2.10) (2.49-2.45)
Measured Reflect. 240,244 161,406 134,487 104,724
Unique Reflections 33,433 26,521 23,871 32,636
I/σ 28.6 (2.9) 40.7 (6.4) 30.1 (5.2) 17.8 (4.4)
Completeness (%) 96.4 (80.7) 98 (98.1) 96 (75.1) 93 (59.0)
Rsym/Rmerge (%)b 6.9 (34.4) 7.7 (37.7) 8.9 (33.1) 9.8(16.5)
Refinement
Rcryst (%) 0.21 0.23 0.20 0.22
Rfree 0.28 0.30 0.28 0.29
R.m.s deviations
 Bond length (Å) 0.015 0.014 0.011 0.014
 Angle (°) 1.5 1.4 1.3 1.6
Monomer in ASU 5 2 2 4
Total Atoms 7420 3343 3342 6246
Protein atoms 7153 2987 2943 5971
Water molecules 197 329 375 112
Ligand Na+, Cl, Tartrate Mg2+, Cl, PEG, Tris Mg2+, PEG, Na+, Cl Mg2+, GDP-mannose, Na+, Cl
Bfactor (protein)Å2 44.4 33.2 24.0 46.2
Bfactor (ligand) Å2 65.1 49.5 42.7 52.7
Bfactor (H20) Å2 41.6 39.6 31.0 45.4
Ramachandran(MF, allowed) % c 87.1, 100 88.4, 100 89.8, 99.4 88.6, 99.7
PDB Accession Code 3O52 3O6Z 3O69 3O61
a

Data in parentheses correspond to the outer resolution shell.

b

RsymhklΣJ|Ij-<I>|/ΣhklΣJ Ij where <I> is the mean intensity of j observations from a reflection hkl and its symmetry equivalents.

c

MF=Percentage of residues in most favorable region allowed= Percentage of residues in allowed region