. Author manuscript; available in PMC: 2011 Sep 2.

Published in final edited form as: Neurogenetics. 2011 Jun 4;12(3):223–232. doi: 10.1007/s10048-011-0285-6

Table 1.

Novel SSR and SNP markers used in this study.

Marker ID	CFA2 location^*	Polymorphism Details ^§	Forward (F) and reverse (R) primers 5′ -> 3′
C02p027	85,058,262	SSR - (CTTTT)₁₅	F- CACCGCCCCGTTTGACAGG R- CTCGCCAGCCCCCACACCAC
0258^†	86,044,331	SSR - (AC)₁₈	F- CTGAGAGGCACAGCCAACAC R- GCTCCTTCTTCGACGTGCTT
C02p024	87,685,847	SSR - (CA)₂₀	F- CCTTGGGGCCACATGACTTCTACC R- CTTTATTTCTGCGTGCCCTTGTGC
C02p014	88,241,450	SSR - (CA)₂₂	F- TCCCTGAATCCTGAGCAAAAT R- GCGGCCAGGATGTGTCAAAATA
C02ps501	86,795,606	SNP - A/G, in VPS13D 3′ UTR, Hha I digest	F- CACCCGCCCACGCTCTACACTCTG R- ACCCCTCACCCCTCACCCCTTACG
C02ps502	87,029,973	SNP - C/T, in TNFSRF1B intron	F- GGTGGGGCCGGCAGGTATC R- TAGCAGGGGCCGTGGTAAGAGTTT
C02ps503	87,039,470	SNP - A/C, centromeric of TNSRSF8	F- AACGGGGGACGGAGCCTTCTGC R- GCCGCCGCCTGTGATGTGGTCT
C02ms504	87,300,627	SNP - C/T, in CLCN6 intron, Msp I digest	F- AGGTGGCTGCAAGCAGGAGGAAC R- GTGGGTGTTGGGTGAAACGGTGA

location of beginning of simple sequence repeat or SNP, based on CanFam2 dog genome assembly

^§

SSR-simple sequence repeat; SNP-single nucleotide polymorphism; subscript indicates copy number in CanFam2 dog genome assembly

^†

see reference [56]