Table 1.
Energies for (Ac-VQIVYK-NHMe)N, (Ac-VQIINK-NHMe)N and parallel and anti-parallel (Ac-Ala6-NHMe)N β-sheets in kcal/mol.
N | H-bonds | ΔE/H-bond (CP) | Distortion/N | ΔE/H-bond (CP) from optimized strand | Δ/H-bond (CP) from optimized strand |
---|---|---|---|---|---|
VQIVYK | |||||
2 | 8 | −5.91 | 13.54 | −2.52 | −2.09 |
3 | 16 | −6.22 | 16.35 | −3.16 | −2.70 |
4 | 24 | −6.34 | 17.40 | −3.44 | −2.97 |
5 | 32 | −6.38 | 17.89 | −3.59 | −3.10 |
6 | 40 | −6.42 | 18.24 | −3.68 | −3.20 |
7 | 48 | −6.46 | 18.57 | −3.75 | −3.26 |
8 | 56 | −6.48 | 18.80 | −3.79 | −3.30 |
9 | 64 | −6.50 | 18.98 | −3.83 | −3.34 |
10 | 72 | −6.52 | 19.16 | −3.86 | −3.37 |
VQIINK | |||||
2 | 9 | −6.06 | 20.35 | −1.54 | −1.06 |
3 | 18 | −6.15 | 21.25 | −2.61 | −2.14 |
4 | 27 | −6.32 | 22.13 | −3.04 | −2.56 |
5 | 36 | −6.39 | 22.50 | −3.27 | −2.78 |
6 | 45 | −6.47 | 22.92 | −3.41 | −2.92 |
7 | 54 | −6.55 | 23.34 | −3.52 | −3.02 |
8 | 63 | −6.59 | 23.57 | −3.60 | −3.10 |
9 | 72 | −6.63 | 23.74 | −3.66 | −3.16 |
10 | 81 | −6.65 | 23.82 | −3.71 | −3.21 |
P | |||||
AAAAA | |||||
A | |||||
2 | 7 | −5.95 | 8.89 | −3.41 | −2.83 |
3 | 14 | −6.13 | 11.34 | −3.71 | −3.12 |
4 | 21 | −6.16 | 12.18 | −3.84 | −3.25 |
5 | 28 | −6.19 | 12.70 | −3.92 | −3.34 |
6 | 35 | −6.20 | 13.06 | −3.96 | −3.37 |
7 | 42 | −6.21 | 13.31 | −3.99 | −3.40 |
8 | 49 | −6.22 | 13.50 | −4.01 | −3.42 |
9 | 56 | −6.22 | 13.65 | −4.03 | −3.44 |
10 | 63 | −6.23 | 13.76 | −4.04 | −3.45 |
AP | |||||
AAAAAA | |||||
2 | 7 | −5.29 | 4.98 | −3.86 | −3.35 |
3 | 14 | −6.02 | 9.00 | −4.09 | −3.55 |
4 | 21 | −6.19 | 9.98 | −4.29 | −3.75 |
5 | 28 | −6.29 | 10.67 | −4.38 | −3.84 |
6 | 35 | −6.33 | 10.99 | −4.45 | −3.91 |
7 | 42 | −6.37 | 11.32 | −4.48 | −3.95 |
8 | 49 | −6.39 | 11.53 | −4.51 | −3.98 |
9 | 56 | −6.41 | 11.71 | −4.53 | −4.00 |
10 | 63 | −6.43 | 11.83 | −4.55 | −4.01 |