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. Author manuscript; available in PMC: 2012 Sep 8.
Published in final edited form as: J Phys Chem B. 2011 Aug 11;115(35):10560–10566. doi: 10.1021/jp205388q

Table 1.

Energies for (Ac-VQIVYK-NHMe)N, (Ac-VQIINK-NHMe)N and parallel and anti-parallel (Ac-Ala6-NHMe)N β-sheets in kcal/mol.

N H-bonds ΔE/H-bond (CP) Distortion/N ΔE/H-bond (CP) from optimized strand Δ/H-bond (CP) from optimized strand
VQIVYK
 2 8 −5.91 13.54 −2.52 −2.09
 3 16 −6.22 16.35 −3.16 −2.70
 4 24 −6.34 17.40 −3.44 −2.97
 5 32 −6.38 17.89 −3.59 −3.10
 6 40 −6.42 18.24 −3.68 −3.20
 7 48 −6.46 18.57 −3.75 −3.26
 8 56 −6.48 18.80 −3.79 −3.30
 9 64 −6.50 18.98 −3.83 −3.34
 10 72 −6.52 19.16 −3.86 −3.37
VQIINK
 2 9 −6.06 20.35 −1.54 −1.06
 3 18 −6.15 21.25 −2.61 −2.14
 4 27 −6.32 22.13 −3.04 −2.56
 5 36 −6.39 22.50 −3.27 −2.78
 6 45 −6.47 22.92 −3.41 −2.92
 7 54 −6.55 23.34 −3.52 −3.02
 8 63 −6.59 23.57 −3.60 −3.10
 9 72 −6.63 23.74 −3.66 −3.16
 10 81 −6.65 23.82 −3.71 −3.21
 P
AAAAA
 A
 2 7 −5.95 8.89 −3.41 −2.83
 3 14 −6.13 11.34 −3.71 −3.12
 4 21 −6.16 12.18 −3.84 −3.25
 5 28 −6.19 12.70 −3.92 −3.34
 6 35 −6.20 13.06 −3.96 −3.37
 7 42 −6.21 13.31 −3.99 −3.40
 8 49 −6.22 13.50 −4.01 −3.42
 9 56 −6.22 13.65 −4.03 −3.44
 10 63 −6.23 13.76 −4.04 −3.45
 AP
AAAAAA
 2 7 −5.29 4.98 −3.86 −3.35
 3 14 −6.02 9.00 −4.09 −3.55
 4 21 −6.19 9.98 −4.29 −3.75
 5 28 −6.29 10.67 −4.38 −3.84
 6 35 −6.33 10.99 −4.45 −3.91
 7 42 −6.37 11.32 −4.48 −3.95
 8 49 −6.39 11.53 −4.51 −3.98
 9 56 −6.41 11.71 −4.53 −4.00
 10 63 −6.43 11.83 −4.55 −4.01