Table 2.

Outputted probability values concerning the dot blot validation assays

Strain no.	Strain name	Species abbreviation in Fig. 1–4	Calculated ON probabilitya
			XA3	XA5	XC1	XO4
1	Xanthomonas arboricola pv. celebensis LMG 677	Xac	0.04 ± 0.05	0.86± 0.22	0.81± 0.22	0.1 ± 0.13
2	Xanthomonas arboricola pv. corylina LMG 689	Xaco	0.86± 0.12	1± 0	1± 0.01	0 ± 0
3	Xanthomonas arboricola pv. juglandis LMG 747	Xaj	0.01 ± 0.01	0.99± 0.02	0.97± 0.04	0.02 ± 0.03
4	Xanthomonas arboricola pv. pruni LMG 852	Xap	0.01 ± 0.02	1± 0	1± 0	0 ± 0
5	Xanthomonas axonopodis pv. citri LMG 9322	Xaci	0.01 ± 0.01	0.97± 0.06	0.92± 0.14	0.01 ± 0.01
6	Xanthomonas axonopodis pv. diffenbachiae LMG 695	Xad	0.02 ± 0.03	0.88± 0.13	0.87± 0.13	0 ± 0
7	Xanthomonas axonopodis pv. phaseoli LMG 7455	Xaph	0 ± 0	1± 0	1± 0	1± 0
24	Xanthomonas axonopodis pv. vesicatoria LMG 905	Xav	1± 0	1± 0	1± 0	0 ± 0.01
25	Xanthomonas campestris pv. vesicatoria LMG 907	Xcv	1± 0.01	1± 0	1± 0	0.99± 0.02
26	Xanthomonas campestris pv. campestris LMG 568	Xcc	0.03 ± 0.03	0.04 ± 0.06	0.84± 0.23	0.01 ± 0.01
28	Xanthomonas fragariae 708	Xf	1± 0	0.4 ± 0.37	0.8± 0.31	0.27 ± 0.34
54	Xanthomonas oryzae pv. oryzae LMG 5047	Xoo	0.02 ± 0.01	0.08 ± 0.08	1± 0	0.05 ± 0.06
55	Xanthomonas oryzae pv. oryzicola LMG 797	Xooa	0.01 ± 0.02	0.06 ± 0.07	1± 0	0.01 ± 0.01
56	Xanthomonas translucens pv. translucens LMG 876	Xtt	0 ± 0.01	0.13 ± 0.17	0.14 ± 0.13	0 ± 0
57	Xanthomonas vesicatoria LMG 911	Xv	0 ± 0.01	1± 0	0.98± 0.04	0 ± 0
58	Clavibacter michiganensis subsp. michiganensis LMG 7333	Cmm	0 ± 0	0.02 ± 0.04	0.01 ± 0.01	0 ± 0
59	Erwinia amylovora LMG 2024	Ea	0.01 ± 0.01	0.01 ± 0.01	0.03 ± 0.02	0 ± 0
60	Pectobacterium atrosepticum LMG 2386	Pa	0 ± 0	0 ± 0	0.01 ± 0.03	0 ± 0
61	Pectobacterium carotovorum subsp. carotovorum LMG 2404	Pcc	0.01 ± 0.01	0.01 ± 0.02	0.07 ± 0.05	0 ± 0
62	Pectobacterium chrysanthemi LMG 2804	Pch	0.02 ± 0.02	0.01 ± 0.01	0.06 ± 0.08	0.01 ± 0.01
63	Pseudomonas fluorescens Pf0-1	Pf	0.03 ± 0.02	0.01 ± 0.02	0.02 ± 0.02	0 ± 0.01
64	Pseudomonas putida KT 2440	Pp	0.07 ± 0.1	0 ± 0	0.02 ± 0.02	0.01 ± 0.03
65	Pseudomonas savastanoi pv. glycinea LMG 5066	Psvg	0.01 ± 0.02	0.03 ± 0.05	0.23 ± 0.35	0.1 ± 0.19
66	Pseudomonas savastanoi pv. phaseolicola LMG 2245	Psvp	0 ± 0.01	0.01 ± 0.02	0.07 ± 0.09	0 ± 0
67	Pseudomonas syringae pv. helianthi LMG 5067	Psh	0.01 ± 0.01	0.01 ± 0.01	0.01 ± 0.01	0 ± 0
68	Pseudomonas syringae pv. maculicola LMG 5071	Psm	0 ± 0	0.03 ± 0.03	0.01 ± 0.01	0 ± 0
69	Pseudomonas syringae pv. oryzae LMG 10912	Pso	0 ± 0	0.02 ± 0.04	0.05 ± 0.05	0 ± 0
70	Pseudomonas syringae pv. syringae DSM 10604	Pss	0 ± 0	0.01 ± 0.02	0.01 ± 0.01	0 ± 0
71	Pseudomonas syringae pv. tabaci LMG 5393	Pstb	0.04 ± 0.05	0.18 ± 0.2	0.09 ± 0.07	0.14 ± 0.14
72	Pseudomonas syringae pv. tomato DC 3000	Pst	0.01 ± 0.01	0.02 ± 0.04	0 ± 0	0.03 ± 0.05
73	Ralstonia picketii LMG 5942	Rp	0.04 ± 0.06	0.32 ± 0.1	0.13 ± 0.08	0 ± 0.01
74	Ralstonia solanacearum LMG 2299	Rs	0.06 ± 0.1	0.06 ± 0.05	0.07 ± 0.09	0 ± 0
75	Ralstonia solanacearum LMG 2302	Rs	0.05 ± 0.08	0.02 ± 0.04	0.01 ± 0.03	0 ± 0.01
76	Ralstonia solanacearum LMG 2306	Rs	0.1 ± 0.15	0.01 ± 0.02	0.01 ± 0.01	0.04 ± 0.05
77	Ralstonia solanacearum LMG 17138	Rs	0 ± 0.01	0.04 ± 0.08	0.01 ± 0.03	0 ± 0
78	Ralstonia solanacearum LMG 17140	Rs	0.01 ± 0.02	0.01 ± 0.02	0.06 ± 0.05	0 ± 0
79	Stenotrophomonas maltophilia LMG 958	Sm	0.01 ± 0.02	0.04 ± 0.06	0.06 ± 0.06	0 ± 0.01
80	Xylella fastidiosa LMG 17159	Xllf	0 ± 0.01	0.02 ± 0.04	0.04 ± 0.03	0.03 ± 0.05
7–19b	Xanthomonas axonopodis pv. phaseoli	Xaph	(0.000-0.094)	(0.873-1.000)	(0.855-0.990)	(0.831-1.000)
20	Xanthomonas fuscans subsp. fuscans CPBF 507	Xff	0.01 ± 0.01	1± 0	0.95± 0.06	0 ± 0.01
21	Xanthomonas fuscans subsp. fuscans CPBF 508	Xff	0 ± 0	1± 0.01	0.98± 0.04	0 ± 0
22	Xanthomonas fuscans subsp. fuscans CPBF 509	Xff	0.01 ± 0.01	0.96± 0.07	0.96± 0.05	0 ± 0
23	Xanthomonas fuscans subsp. fuscans CPBF 795	Xff	0 ± 0	0.99± 0.02	1± 0	0 ± 0
27–53b	X. fragariae	Xf	(1.000-1.000)	(0.026-0.088)	(0.450-0.630)	(0.006-0.018)

The values shown represent the average probability ± standard deviation. The values considered as positive signals are highlighted in bold. The 99% confidence intervals for the mean probability values obtained with the Xanthomonas axonopolis pv. phaseoli (strains 7 to 19) and X. fragariae (strains 27 to 53) collections are displayed in parentheses and calculated according to the equation x̄ + z̄_{[1 − (α/2)]}(s/$\sqrt{n}$), where x= is the average probability value, z is the standard score, s is the standard deviation, and n is the number of replicates.

^bStrain-specific probability values are detailed in Table S3 in the supplemental material.