Table 2.
Putative genes identifieda
| Gene or ORF | Size (bp) | Homologb | Identity (%) | Predicted functionc |
|---|---|---|---|---|
| ORF1 (partial) | 1,175 | bamb_6465 | 93 | FAD-linked oxidase domain protein |
| ambR1 | 822 | bamb_6466 | 89 | LuxR-type regulator |
| ambR2 | 891 | bamb_6468 | 77 | LuxR-type regulator |
| ocfA | 1,704 | bamb_6469 | 90 | Cyclic peptide transporter |
| ocfB | 483 | bamb_6470 | 82 | Hypothetic protein |
| ocfC | 657 | bamb_6471 | 94 | Glycosyl transferase |
| ocfD | 9,495 | bamb_6472 | 88 | NRPS |
| ocfE | 9,066 | bamb_6473 | 89 | NRPS |
| ocfF | 3,921 | bamb_6474 | 90 | NRPS |
| ocfG | 1,617 | bamb_6475 | 93 | Hydroxylase |
| ocfH | 13,410 | bamb_6476 | 91 | Hybrid NRPS-PKS |
| ocfI | 3,324 | bamb_6477 | 92 | Flavin-dependent monooxygenase |
| ocfJ | 4,428 | bamb_6478 | 91 | NRPS |
| ocfK | 987 | bamb_6479 | 91 | Halogenase |
| ocfL | 1,371 | bamb_6480 | 91 | Transaminase |
| ocfM | 951 | bamb_6481 | 94 | Epimerase |
| ocfN | 720 | bamb_6482 | 90 | Thioesterase |
| ORF16 | 288 | C7511 | 93 | Conserved hypothetical proteind |
a
The shaded gray region represents previously published work (13, 14). Annotations of a 12.9-kb genomic DNA fragment upstream of ocfH are not shaded.
b
Homolog to the putative proteins of Burkholderia ambifaria AMMD (GenBank accession no. NC_008392).
c
Predicted functions are based on annotation of strain AMMD and strain 383.
d
Homolog to C7511 of B. lata 383 (GenBank accession no. NC_007509).