Table 4.
Comparison of Roche-454 and Illumina hits from CSF 1000: viruses identifieda
| Virus identified | Roche-454 |
Illumina |
||
|---|---|---|---|---|
| No. of hits | Identity (%) | No. of hits | Identity (%) | |
| RABV | 1 | 99 | 569 | 99 |
| PV | 0 | 37 | 99 | |
| HHV-4 | 0 | 95 | 99 | |
| TTV | 176 | 78 | 16,793 | 87 |
| HHV-1 | 0 | 7 | 100 | |
| HPV-18 | 0 | 1 | 100 | |
| Rift Valley fever virus | 0 | 3 | 99 | |
a
The percent identity values correspond to averages. The percent identities for TTV, Rift Valley fever virus, and HPV-18 were obtained after comparison to the closest reference sequences identified by BLAST in the database nr. Other viruses are as described in Table 2.