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. 2011 Sep;85(17):9139–9146. doi: 10.1128/JVI.00658-11

Table 2.

Target and product K-mer motifs of hA3G/Fa

Target K-mer Product K-mer
GG, GA, GT, GC AG, AA, AT, AC
TGG, CGG, AGG, GGG, GGT, GGC, GGA TAG, CAG, AAG, GAG, GAT, GAC, GAA
TGGG, TGGA, CGGG, TGGT, AGGG, GGGG, CGGT, AGGA,
    AGGT, GGGA, GGGT, TGGC, AGGC, GGGC, CGGA, CGGC TAGG, TAGA, CAGG, TAGT, AAGG, GAGG, CAGT, AAGA, AAGT, GAGA, GAGT, TAGC, AAGC, GAGC, CAGA, CAGC
a

Targeted positions are shown by an underline. Within each K-mer set, the motifs are ordered from highly targeted to the least targeted. NGGC motifs are the least favored 4-mer motifs (N is A, G, C, or T).