Table I.
Comparison of select models and crops
Parameter | Arabidopsis | Barley | Brachypodium | Foxtail Millet | M. sinensis | Maize | Rice | S. viridis | Sorghum | Switchgrass | Wheat |
Height (cm) | 15–20 | 50–120 | 15–20 | 120–200 | 150–300 | 120–300 | 100 | 10–250 | 50–250 | 200–300 | 50–100 |
Densitya (plants m−2) | 2,000 | 80–120 | 1,000 | 50 | 3–4 | 4 | 36 | 1,000 | 50 | 6 | 50 |
Growth requirementsb (controlled conditions) | Simple | Intermediate | Simple | Intermediate | Demanding | Demanding | Demanding | Simple | Demanding | Demanding | Intermediate |
Efficiently crossed? | Yes | Yes | Yes | No | Yes | Yes | Yes | No | Yes | Yes | Yes |
Reproduction | Selfing | Selfing | Selfing | Selfing | Outcrossing | Outcrossing/self-compatible | Selfing | Selfing | Selfing | Outcrossing | Selfing |
Typical generation time (weeks) | 8–12 | 10–20 | 8–12 | 11–13 | 12 | 8–15 | 12–24 | 6–8 | 13–18 | 26 | 10–20 |
Seeds per plant | >1,000 | 150–200 | 100–1,000 | >10,000 | >1,000 | 200–1,000 | >1,000 | >5,000 | >1,000 | >1,000 | 50–150 |
Transformation | Extremely easy | Efficient, but labor intensive | Highly efficient | Reported, but not efficient | Inefficient | Efficient, but labor intensive | Highly efficient | Efficientc | Inefficient | Efficient, but slow | Inefficient |
Genome size (Mb) | 119d | 5,500 | 272d | 515 | 5,000 | 2,300df | 382d | 515 | 700de | 2,400 | 16,000 |
Assembled genome sequence | Finished genome sequence | Draft genome sequencing in progress | High-quality draft (finishing under way) | Draft genome | No | Draft genomef | Finished genome sequence | Draft genome sequencing in progress | Draft genomed | Sequencing in progress | Sequencing in progress |
T-DNA resources | Extensive | None | 10,000 lines available, 40,000 more planned | None | None | Transposon mutants are available | Extensiveg | None | None | None | None |
Cell wall type | Type 1 | Type 2 | Type 2 | Type 2 | Type 2 | Type 2 | Type 2 | Type 2 | Type 2 | Type 2 | Type 2 |
Photosynthesis | C3 | C3 | C3 | C4 | C4 | C4 | C3 | C4 | C4 | C4 | C3 |
High-density planting under laboratory conditions.
The difficulty of growing plants is dependent upon their size and the range of environmental conditions tolerated. Thus, small plants that tolerate varied conditions have simple growth requirements and large plants that need carefully controlled environmental conditions have demanding growth requirements.
Unpublished data (T. Brutnell).
Assembled genome size.
Approximately 20% of the genome was not assembled because of the repetitive nature.
Assembly consists of sequenced BACs many of which contain unordered genes because of the difficulty associated with assembling repetitive DNA.
While rice has extensive insertional mutant resources, the availability of the resources is constrained by quarantine restrictions and intellectual property concerns.