Table 5. Abundantly expressed small RNAs.
Type a | Small RNA b | Frequency c | Location d |
tRNA-His (GUG) | TCTGAATACCCGGGTTCGATTCCCGGTCTTCCCTCCA | 41,929 | 3′ |
rRNA | ATATCGAATCGCCATCCAAATCATCTGGTAGGC | 6737 | - |
rRNA | TCTGCCTGCCCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACA | 4316 | - |
tRNA-Gln (UUG) | GGTCCTATAGTGTAGTGGTTATCACTTCGGACTTT | 3063 | 5′ |
tRNA-Ala (CGC) | ACGGAAGGCCTAGGGTTCGATCCCCTACTCGTCCACCA | 2601 | 3′ |
tRNA-Tyr (GUA) | TCACAGGGTCGCTGGTTCGTTTCCGGCCGGAAGGACCA | 2332 | 3′ |
tRNA-Trp (CCA) | TCCAGGGGTCGCAGGTTCAATCCCTGCAGTCCTCACCA | 1992 | 3′ |
rRNA | TCTGCCTGCCCTCGAAGGCGCCAAGTATCTCCATGATCACAAGACAT | 1951 | - |
rRNA | ACACGTCCCTCTCCAAAC | 1940 | - |
tRNA-Glu (UUC) | TCCGATATGGTATAACGGTTAGAACACCTGGC | 1593 | 5′ |
tRNA-Arg (ACG) | TCAGAGGGTTGCAGGTTCGGGTCCTGTCACGGATGC | 1415 | 3′ |
tRNA-Asp (GUC) | TTCTCGGTAGTATAGTGGTAAGTATACCCGCCTGTCAC | 1160 | 5′ |
rRNA | ATATCGAATCGCCATCCAAATCATCTGGTAGGCTCTGCCTGCCC | 1034 | - |
tRNA-Thr (UGU) | GGCCTCGTAGCACAGTGGTAGTGCACTGGT | 1010 | 5′ |
rRNA | ACACGTCCCTCTCCAAACGAGAGAACATGCATGGGCTGGCATGAGCGG | 597 | - |
snRNA | AAGGCATCGTCGTTTCGACTTTTACTAAGCGACGCAGCCCAAAC | 174 | - |
snoRNA | TAACCGCGGGTAGCACCGTTGTGGAGCACAAAC | 15 | - |
The type of non-coding RNA from where this small RNA is derived. The triplet inside the parenthesis refers to the anticodon of the tRNA gene.
The sequence of the small RNA.
Refers to the number of identical copies of this small RNA that was found in the sequencing data.
For small RNAs derived from tRNAs this refers to if the small RNA is derived from 3′ or 5′ of a mature tRNA.