Table 1. Prediction results of our algorithm (φ,η)  =  (0.005,39) for the known OMIM disease genes of the 40 diseases under study.

h	TP	TPR	FPR	TPR/FPR
1	28	0.081	0.009	9
10	120	0.345	0.098	3.520
15	163	0.468	0.147	3.184
24	208	0.600	0.236	2.542
30	233	0.670	0.296	2.264

h: number of genes on the top of the candidate ranking that was predicted as disease-associated; TP: true positive numbers, i.e., number of known disease genes that was predicted as disease-associated; TPR: true positive rates; FPR: false positive rates.