Table 2.
Comparison between various Blast configurations
| Blast Flavor | Mat | #TP10 | #TP20 | #HSPs | CPU (s) |
|---|---|---|---|---|---|
| WU-BlastN | +5/−4 | 514 | 538 | – | 3 |
| WU-BlastP/BlosumN | BlosumN | 535 | 553 | – | 440 |
| WU-BlastN Opt | +5/−4 | 533 | 551 | – | 6 |
| WU-BlastR | BlosumR | 541 | 557 | – | 169 |
| NCBI-BlastN | +1/−3 | 523 | 530 | 51565 | 6 |
| NCBI-BlastP/BlosumN | BlosumN | 492 | 521 | 553738 | 156 |
| NCBI-BlastN Opt | +1/−3 | 499 | 525 | 149065 | 103 |
| NCBI-BlastR | BlosumR | 509 | 539 | 171891 | 89 |
‘Blast Flavor’ indicates which Blast was used, ‘Mat’ indicates which matrix, ‘#TP10′ and ‘#TP20′ indicate how many weighted TPs were reported for a total of, respectively, 10 and 20 accepted weighted FPs. ‘#HSPs’ indicates how many HSPs were reported (only for NCBI). ‘CPU’ indicates the CPU time in seconds.