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Predicted number of van der Waals contacts of the complexes H2/epitopes by the in silico docking assays. Putative epitopes P1, P2, P4, P5, P6, P7 and P8 were assayed with H-2Kd - BALB/c mice (A), while P2, P3, P8 and P9 were assayed with H-2Kk - CBA mice (B). Control assays were performed by redocking the original cocrystallized epitopes to their respective H-2 haplotype (PDB codes: 1vgk and 1zt7).
