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. Author manuscript; available in PMC: 2012 Sep 7.
Published in final edited form as: Structure. 2011 Aug 4;19(9):1219–1232. doi: 10.1016/j.str.2011.05.014

Table II.

Results of computational docking

rank1 energy terms
total2 vdW H3 vdW C4 H-bond5 electrostatic6 hydrophobic7
1 −44.9 −4.71 −37.83 −4.71 −1.10 −12.32
2 −40.6 −5.76 −32.46 −3.68 −1.31 −11.48
3 −39.4 −5.76 −31.49 −7.75 −2.43 −8.80
4 −36.2 −3.55 −39.56 −2.65 0.42 −13.89
5 −35.9 −4.56 −21.10 −17.63 −4.53 −8.71
6 −35.6 −3.30 −27.97 −7.93 −0.51 −9.68
7 −35.3 0.07 −25.46 −9.20 −1.05 −9.59
8 −35.3 −0.30 −26.78 −3.53 −0.55 −11.70
9 −35.2 −3.05 −28.23 −8.29 −3.38 −11.30
10 −35.2 −7.25 −33.14 −10.48 −2.26 −10.74
1

Each docking result was ranked according to its total energy. In our application, the lowest energy solution (rank 1) was well separated from the succeeding solutions, lending confidence to the result.

2

Total energy of the conformation. These values are reported as kcal/mol by ICM but should only be taken as relative binding energies due to various approximations during the calculation.

3

van der Waals grid potential using a hydrogen probe.

4

van der Waals grid potential using a carbon probe.

5

Hydrogen bonding grid potential.

6

Electrostatic grid potential.

7

Hydrophobic grid protential.