TABLE 1.
No. | HSV-2 ORF | ORF classa | Common name | ORF Length (aa) | # peptidesb | # pools | # peptides/pool |
---|---|---|---|---|---|---|---|
1 | US6 | gp | gD-2 | 393 | 96 | 1 | 96 |
2 | RL2 | IE | ICP0 | 824 | 198 | 2 | 98,100 |
3 | US1 | IE | ICP22 | 413 | 101 | 2 | 50,51 |
4 | UL54 | IE | ICP27 | 512 | 126 | 2 | 63,63 |
5 | RS1 | IE | ICP4 | 1,318 | 330 | 4 | 82,82,83,83 |
6 | UL39 | other | ICP6 | 1,142 | 283 | 3 | 94,94,95 |
7 | UL19 | capsid | VP5/ICP5 | 1,375 | 341 | 4 | 85,85,85,86 |
8 | UL25 | capsid | 585 | 144 | 2 | 72,72 | |
9 | UL35 | capsid | VP26 | 112 | 26 | 1 | 26 |
10 | UL46 | tegument | VP11/12 | 722 | 178 | 2 | 89,89 |
11 | UL47 | tegument | VP13/14 | 696 | 172 | 2 | 86,86 |
12 | UL49 | tegument | VP22 | 300 | 74 | 1 | 74 |
13 | UL11 | tegument | 96 | 22 | 1 | 22 | |
14 | UL27 | gp | gB | 904 | 224 | 3 | 74,87,63 |
15 | UL29 | other | ICP8 | 1,196 | 297 | 3 | 99,99,99 |
16 | US5 | gp | gJ | 92 | 21 | 1 | 21 |
Totals | 2,633 | 34 | range: 21–100 |
Open reading frames (ORF) for study encoded glycoproteins (gp), immediate early (IE), capsid, tegument or other proteins.
15 mers overlapping by 11 amino acids (aa).