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. Author manuscript; available in PMC: 2012 Jul 1.
Published in final edited form as: J Proteome Res. 2011 Jun 14;10(7):3261–3273. doi: 10.1021/pr200290x

Table 1.

Summary of H. marismortui peptides identified by MS/MS.

Samples Membrane Soluble
OD600 0.7 1.2 0.7 1.2
Total # matches a 16,758 15,836 13,334 14,134
Total # Hma matches a 16,746 15,826 13,317 14,109
# decoy matches a 12 10 17 25
FDR b 0.07% 0.06% 0.13% 0.18%
# proteins identified 596 626 842 862
692 913
1,310
a

Only the peptide and decoy hits with a PeptideProphet probability above 0.9 were counted

b

FDR = # decoy matches/(total # Hma matches) × 100%