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. 2011 Jul 19;24(10):777–789. doi: 10.1093/protein/gzr036

Fig. 3.

Fig. 3.

Schematic illustrating the process of design incorporating solvation of the ligand. The symbols HR1 and HR2 represent functional group positions. The symbol W1 represents a growable water position from a hydrogen-bond donor and the symbol W2 represents a growable water position from a hydrogen-bond acceptor. Wavy lines indicate a potential bond and dashed lines indicate a hydrogen bond. The first stage of design involves growing functional groups (a) and the second involves growing water molecules (b).