Table II.
Five most conserved motifs identified by MEME (Bailey and Elkan, 1994) within Class D with two motifs (6 and 7) contained in sequences outside the large α-, β- and γ-proteobacteria group
| Motif number | Length | Information content (bits) | Motif | Indices (3ISG) |
|---|---|---|---|---|
| 1 | 29 | 71.7 | S[AV]V[WP][VY][YS]QE[LI][AT]RR[IL]GxE[RK][MF]QKY[LV]K[KRA][FL]DYGN | 115–143 |
| 2 | 36 | 70.8 | IS[AP]x[EQ]Q[VI]xFLR[KR]L[YA]R[NG]KLP[FV]xSA[ER][AS]Q[DR][LM][VT]KDI[ML][IL]VE | 167–202 |
| 3 | 23 | 59.9 | [SL]PAxSTFKI[PA][NL][SAT]L[IM][GA]L[DE][AT]G[AV][VL]KD | 63–86 |
| 4 | 15 | 30.2 | [AE]GxG[GD][WY][KI][LIV][RYH][GA]KTGWG | 203–216 |
| 5 | 21 | 32.2 | ADI[SG]GDxGxx[GN]G[LIV][DT]x[FA]WL[DE][GS][SP] | 144–164 |
| 6 | 29 | 45.7 | E[RN]x[DS]x[WL]AKLFS[DE]AG[AVT]KG[TV][FI]V[LI]YDERxxxx | 19–46 |
| 7 | 11 | 23.0 | [VT][NH][ND]L[AE]R[AS]x[QTK]R[YF] | 49–59 |
Highly conserved residues (>95%) are shown in bold font.