Table III.
Group-specific residues determined through Gent (Hempel et al., 2003; shannon.psc.edu/harvest)
| Alignment index | Family entropy | Group entropy | Residue | AA out |
|---|---|---|---|---|
| α-, β- and γ-proteobacteria (3ISG) 22–93% | ||||
| 182 | 3.36 | 24.23 | Trp111 | Ala |
| 191 | 3.04 | 19.79 | Ser120 | Phe/Tyr |
| 179 | 2.26 | 17.94 | Pro108 | Leu |
| 121 | 2.78 | 18.38 | Cys59 | Ala/Ser |
| 135 | 2.33 | 17.12 | Leu73 | Asn/His |
| 98 | 2.60 | 11.69 | Cys37 | Thr/Val |
| Pseudomonas aeruginosa (1K57) 76–94% | ||||
| 311 | 3.34 | 14.12 | Ala220 | Gly |
| 102 | 0.87 | 12.48 | Cys44 | Varies |
| β- and γ-proteobacteria (1K38) 49–90% | ||||
| 319 | 1.48 | 16.59 | Trp221 | Lys,Arg |
| 138 | 2.82 | 14.96 | Phe76 | Ile, Met |
| 203 | 2.46 | 13.90 | Ala132 | Varies |
| Shewanellaceae (3HBR) 46–92% | ||||
| 180 | 1.21 | 11.74 | Ile112 | Arg, Lys |
| 102 | 0.87 | 11.30 | Trp47 | Varies |
| Acinetobacter (3FV7) 44–99% | ||||
| 202 | 2.32 | 15.45 | Leu144 | Arg, Lys |
| 206 | 2.94 | 14.64 | Glu148 | Tyr |
Highest common taxonomy classifier, a PDB structure chosen as a representative of the group and the sequence identity range are given for each group. Second to last column gives the identity and position of the group-specific residue as it relates to the representative PDB. The final column gives the most common amino acid outside of the group in that alignment position.