Table 2.
Vdw residue backbone scoring function (PIE_Vdw_Res_Bkbn).
ILE | VAL | LEU | PHE | CYS | MET | ALA | GLY | THR | SER | TRP | TYR | PRO | HIS | ASN | GLN | ASP | GLU | LYS | ARG | NH | CO | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ILE | 0.132 | 0.072 | 0.09 | 0.086 | 0.066 | 0.1 | 0.055 | 0.077 | 0.058 | 0.03 | 0.016 | 0.063 | 0.001 | 0.024 | 0.018 | 0.034 | 0.016 | −0.007 | −0.025 | 0.009 | −0.041 | 0.006 |
VAL | 0.072 | 0.16 | 0.104 | 0.059 | −0.006 | 0.058 | 0.038 | 0.015 | 0.026 | 0.017 | −0.005 | 0.066 | 0.043 | 0.025 | 0.025 | −0.007 | 0.006 | 0.04 | −0.007 | 0.041 | −0.029 | −0.001 |
LEU | 0.09 | 0.104 | 0.1 | 0.1 | 0.049 | 0.05 | 0.072 | 0.044 | 0.027 | 0.029 | 0.059 | 0.092 | 0.043 | 0.019 | 0.004 | 0.021 | −0.001 | 0.001 | −0.008 | 0.023 | −0.052 | 0.007 |
PHE | 0.086 | 0.059 | 0.1 | 0.071 | 0.067 | 0.094 | 0.036 | 0.041 | 0.065 | 0.032 | 0.021 | 0.089 | 0.074 | 0.049 | 0.051 | 0.049 | 0.034 | 0.02 | −0.023 | 0.029 | −0.037 | 0.005 |
CYS | 0.066 | −0.006 | 0.049 | 0.067 | 0.118 | 0.124 | 0.007 | 0.034 | 0.005 | 0.02 | −0.049 | 0.068 | 0.03 | 0.09 | −0.049 | −0.04 | −0.016 | −0.048 | 0.018 | 0.047 | 0.021 | −0.021 |
MET | 0.1 | 0.058 | 0.05 | 0.094 | 0.124 | 0.059 | 0.058 | 0.057 | 0.056 | 0.048 | 0.054 | 0.099 | 0.006 | 0.044 | 0.047 | 0.025 | 0.012 | −0.01 | −0.015 | 0.003 | −0.049 | 0.009 |
ALA | 0.055 | 0.038 | 0.072 | 0.036 | 0.007 | 0.058 | 0.052 | 0.026 | 0.027 | 0.032 | 0.07 | 0.046 | −0.024 | 0.01 | −0.002 | 0.027 | −0.023 | 0.011 | 0.007 | −0.002 | −0.009 | −0.025 |
GLY | 0.077 | 0.015 | 0.044 | 0.041 | 0.034 | 0.057 | 0.026 | 0.061 | 0.028 | 0.036 | 0.028 | 0.051 | 0.032 | 0.005 | 0.034 | 0.005 | 0.011 | −0.006 | −0.006 | 0.043 | −0.033 | −0.008 |
THR | 0.058 | 0.026 | 0.027 | 0.065 | 0.005 | 0.056 | 0.027 | 0.028 | 0.012 | 0.034 | 0.006 | 0.042 | 0.019 | 0.044 | 0.025 | 0.052 | 0.039 | 0.029 | −0.035 | 0.022 | −0.03 | −0.007 |
SER | 0.03 | 0.017 | 0.029 | 0.032 | 0.02 | 0.048 | 0.032 | 0.036 | 0.034 | 0.034 | 0.019 | 0.007 | 0.038 | 0.047 | 0.007 | 0.013 | 0.01 | 0.034 | 0.01 | −0.007 | −0.015 | −0.022 |
TRP | 0.016 | −0.005 | 0.059 | 0.021 | −0.049 | 0.054 | 0.07 | 0.028 | 0.006 | 0.019 | 0.186 | 0.003 | 0.074 | 0.107 | 0.053 | 0.069 | −0.063 | −0.039 | 0.034 | 0.057 | −0.004 | 0.027 |
TYR | 0.063 | 0.066 | 0.092 | 0.089 | 0.068 | 0.099 | 0.046 | 0.051 | 0.042 | 0.007 | 0.003 | 0.103 | 0.078 | 0.022 | 0.057 | 0.013 | 0.014 | 0.004 | −0.002 | 0.046 | −0.033 | 0.013 |
PRO | 0.001 | 0.043 | 0.043 | 0.074 | 0.03 | 0.006 | −0.024 | 0.032 | 0.019 | 0.038 | 0.074 | 0.078 | 0.01 | 0.014 | 0.021 | 0.024 | 0.01 | 0 | −0.052 | −0.013 | −0.045 | 0.004 |
HIS | 0.024 | 0.025 | 0.019 | 0.049 | 0.09 | 0.044 | 0.01 | 0.005 | 0.044 | 0.047 | 0.107 | 0.022 | 0.014 | 0.026 | 0.026 | −0.025 | 0.035 | 0.018 | 0.016 | −0.041 | −0.041 | 0.018 |
ASN | 0.018 | 0.025 | 0.004 | 0.051 | −0.049 | 0.047 | −0.002 | 0.034 | 0.025 | 0.007 | 0.053 | 0.057 | 0.021 | 0.026 | 0.054 | 0.015 | −0.002 | −0.008 | −0.018 | −0.002 | −0.028 | −0.001 |
GLN | 0.034 | −0.007 | 0.021 | 0.049 | −0.04 | 0.025 | 0.027 | 0.005 | 0.052 | 0.013 | 0.069 | 0.013 | 0.024 | −0.025 | 0.015 | 0.003 | 0.008 | −0.031 | 0.023 | 0.005 | −0.025 | 0.008 |
ASP | 0.016 | 0.006 | −0.001 | 0.034 | −0.016 | 0.012 | −0.023 | 0.011 | 0.039 | 0.01 | −0.063 | 0.014 | 0.01 | 0.035 | −0.002 | 0.008 | −0.009 | −0.034 | 0.039 | 0.085 | 0.006 | −0.041 |
GLU | −0.007 | 0.04 | 0.001 | 0.02 | −0.048 | −0.01 | 0.011 | −0.006 | 0.029 | 0.034 | −0.039 | 0.004 | 0 | 0.018 | −0.008 | −0.031 | −0.034 | −0.038 | 0.059 | 0.062 | 0.018 | −0.042 |
LYS | −0.025 | −0.007 | −0.008 | −0.023 | 0.018 | −0.015 | 0.007 | −0.006 | −0.035 | 0.01 | 0.034 | −0.002 | −0.052 | 0.016 | −0.018 | 0.023 | 0.039 | 0.059 | −0.04 | −0.065 | −0.022 | 0.018 |
ARG | 0.009 | 0.041 | 0.023 | 0.029 | 0.047 | 0.003 | −0.002 | 0.043 | 0.022 | −0.007 | 0.057 | 0.046 | −0.013 | −0.041 | −0.002 | 0.005 | 0.085 | 0.062 | −0.065 | −0.016 | −0.042 | 0.027 |
NH | −0.041 | −0.029 | −0.052 | −0.037 | 0.021 | −0.049 | −0.009 | −0.033 | −0.03 | −0.015 | −0.004 | −0.033 | −0.045 | −0.041 | −0.028 | −0.025 | 0.006 | 0.018 | −0.022 | −0.042 | 0.03 | 0.011 |
CO | 0.006 | −0.001 | 0.007 | 0.005 | −0.021 | 0.009 | −0.025 | −0.008 | −0.007 | −0.022 | 0.027 | 0.013 | 0.004 | 0.018 | −0.001 | 0.008 | −0.041 | −0.042 | 0.018 | 0.027 | 0.011 | 0.001 |
VDW | 0.009 |