Table 2.
Clustal W alignment of JMRV genome with select simian and human herpesvirus genomes showing percent nucleotide sequence identity
| Virus | JMRV | RRV | KSHV | HVS | RhLCV | EBV | RhCMV | HHV-6A | HHV-6B | HB virus | SVV | HSV-1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| JMRV | 100 | 89.5 | 47.9 | 35.0 | 27.9 | 22.3 | 19.5 | 27.2 | 26.2 | 27.1 | 31.3 | 25.6 |
| RRV | 89.5 | 100 | 48.3 | 34.7 | 28.3 | 22.6 | 19.9 | 27.6 | 26.5 | 27.6 | 31.5 | 26.1 |
| KSHV | 47.9 | 48.3 | 100 | 32.3 | 27.3 | 22.2 | 19.5 | 26.7 | 25.7 | 27.3 | 29.3 | 26.1 |
| HVS | 35.0 | 34.7 | 32.3 | 100 | 20.2 | 19.4 | 15.9 | 23.5 | 22.8 | 18.6 | 30.7 | 19.4 |
| RhLCV | 27.9 | 28.3 | 27.3 | 20.2 | 100 | 53.1 | 23.2 | 26.1 | 25.1 | 28.3 | 21.7 | 25.8 |
| EBV | 22.3 | 22.6 | 22.2 | 19.4 | 53.1 | 100 | 23.1 | 22.0 | 21.3 | 23.2 | 20.5 | 22.7 |
| RhCMV | 19.5 | 19.9 | 19.5 | 15.9 | 23.2 | 23.1 | 100 | 22.3 | 22.6 | 20.0 | 17.0 | 18.9 |
| HHV-6A | 27.2 | 27.6 | 26.7 | 23.5 | 26.1 | 22.0 | 22.3 | 100 | 88.3 | 25.2 | 24.6 | 24.0 |
| HHV-6B | 26.2 | 26.5 | 25.7 | 22.8 | 25.1 | 21.3 | 22.6 | 88.3 | 100 | 25.0 | 23.7 | 23.7 |
| HB virus | 27.1 | 27.6 | 27.3 | 18.6 | 28.3 | 23.2 | 20.0 | 25.2 | 25.0 | 100 | 21.4 | 49.5 |
| SVV | 31.3 | 31.5 | 29.3 | 30.7 | 21.7 | 20.5 | 17.0 | 24.6 | 23.7 | 21.4 | 100 | 21.9 |
| HSV-1 | 25.6 | 26.1 | 26.1 | 19.4 | 25.8 | 22.7 | 18.9 | 24.0 | 23.7 | 49.5 | 21.9 | 100 |
JMRV, Japanese macaque rhadinovirus (GenBank accession number AY528864.1); RRV, rhesus macaque rhadinovirus (GenBank accession number AF083501); KSHV, Kaposi sarcoma-associated herpesvirus (GenBank accession number U75698); HVS, Herpesvirus saimiri (GenBank accession number NC_001350); RhLCV, rhesus lymphocryptovirus (GenBank accession number AY037858); EBV, Epstein Barr virus (GenBank accession number V01555); RhCMV, rhesus cytomegalovirus (GenBank accession number NC_006150); HHV-6A, human herpesvirus 6A (GenBank accession number NC_001664); HHV-6B, human herpesvirus 6B (GenBank accession number AF157706); HB virus, herpes B virus (GenBank accession number NC_004812); SVV, simian varicella virus (GenBank accession number NC_002686); HSV-1, herpes simplex virus type 1 strain F (GenBank accession number GU734771)