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. Author manuscript; available in PMC: 2011 Sep 11.
Published in final edited form as: Bioconjug Chem. 2008 Nov 19;19(11):2205–2211. doi: 10.1021/bc800322a

Table 1.

Design of NLS-peptide linked molecular beacons

NLS Peptide
(N terminus) C(Ahx)GGGPKKKRKVED (C terminus)
U1 snRNA Molecular Beacon
5’-Cy3-GCAGCCTGCCAGGTAAGTATGC(dT-C6-NH2)GC-BHQ2-3'
U2 snRNA Molecular Beacon
5’-Cy3-CGAGCACAGATACTACACTTGGC(dT-C6-NH2)CG-BHQ2-3'
U3 snoRNA Molecular Beacon
5’-Cy3-CGACCGGCTTCACGCTCAGGGG(dT-C6-NH2)CG -BHQ2-3'
Negative Control Molecular Beacon
5’-Cy3-CGACGCGACAAGCGCACCGATACG(dT-C6-NH2)CG-BHQ2-3'