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Average sensitivity (SN), positive predictive value (PPV), and alignment time for RNA families that do not contain pseudoknots
| Profile-csHMM | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| M-constraint | Original | Proposed | |||||||
| SN (%) | PPV (%) | Time (sec) | SN (%) | PPV (%) | Time (sec) | SN (%) | PPV (%) | Time (sec) | |
| Transfer RNA | 94.2 | 95.8 | 0.0739 | 94.1 | 96.0 | 0.0139 | 93.6 | 96.2 | 0.0108 |
| 5S ribosomal RNA | 94.8 | 96.3 | 0.0676 | 95.1 | 97.0 | 0.0024 | 95.9 | 98.5 | 0.0010 |
