Table 1.
Association mapping results
| Trait | Analysis | Position (bp) | LRT score | SNPs |
|---|---|---|---|---|
| CM1 | SM | 90,075,263 | 42 | rs42766480 |
| CM1 | GAB | 90,670,190 - 90,725,368 | 37 | ss61522200 to ss290490303 |
| CM1 | GAM | 90,642,598 - 90,670,190 | 42 | rs29024027 to ss61522200 |
| CM2 | SM | 89,625,793 | 26 | ss290490281 |
| CM2 | GAB | 89,623,896 - 89,625,793 | 23 | ss61524338 to ss290490281 |
| CM2 | GAM | 89,623,896 - 89,668,440 | 28 | ss61524338 to ss86278591 |
| CM3 | SM | 90,075,263 | 26 | rs42766480 |
| CM3 | GAB | 90,670,190 - 90,725,368 | 18 | ss61522200 to ss290490303 |
| CM3 | GAM | 90,642,598 - 90,670,190 | 19 | rs29024027 to ss61522200 |
| PY | SM | 88,410,501 | 139 | ss86217862 |
| PY | SM | 88,413,712 | 139 | ss86217864 |
| PY | GAB | 88,333,706 - 88,422,590 | 78 | ss86217849 to ss86217869 |
| PY | GAM | 88,333,706 - 88,427,761 | 78 | ss86217849 to ss117968525 |
Highest test scores from single-marker (SM) and haplotype (GAB and GAM) association mapping for protein yield (PY) and clinical mastitis in the periparturient period of first (CM1), second (CM2) and third lactation (CM3). Trait, analysis, chromosome position, Likelihood-ratio test (LRT) score and SNPs are presented for the highest scoring SNP or haplotype block from each analysis.